Skip to main content
crop-pal logo
Banana
Search for another protein from :
Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 1
  • plastid 4
  • mitochondrion 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr3P20130_001
GSMUA_Achr6P02100_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G08920.1 GSMUA_Achr3P20130_001 AT2G32950.1 11509693
AT4G08920.1 GSMUA_AchrUn_... AT2G32950.1 11509693
AT4G08920.1 GSMUA_Achr3P20130_001 AT2G32950.1 11752373
AT4G08920.1 GSMUA_AchrUn_... AT2G32950.1 11752373
AT4G08920.1 GSMUA_Achr6P02100_001 AT4G08920.1 15805487
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d005288_P001 Maize cytosol 19.05 77.33
Zm00001d015045_P001 Maize cytosol 20.63 77.01
Zm00001d028434_P001 Maize cytosol 20.06 76.5
Zm00001d015419_P001 Maize cytosol 18.05 76.36
KRH18908 Soybean cytosol 72.35 74.16
KRH16735 Soybean cytosol 72.21 74.01
VIT_18s0001g05680.t01 Wine grape cytosol 72.92 73.66
KRH62344 Soybean cytosol 71.78 73.57
Solyc04g074180.2.1 Tomato cytosol 71.49 73.49
KRH53063 Soybean cytosol 71.35 73.02
PGSC0003DMT400022039 Potato cytosol, mitochondrion, plastid 60.89 72.9
Solyc12g057040.1.1 Tomato mitochondrion 60.74 72.73
Os04t0452100-02 Rice cytosol 71.06 70.86
AT4G08920.1 Thale cress cytosol 68.19 69.9
Bra037880.1-P Field mustard cytosol 67.91 69.71
KXG30485 Sorghum cytosol 70.2 69.31
TraesCS2D01G317500.1 Wheat cytosol 69.05 69.25
Zm00001d003477_P001 Maize cytosol 68.19 69.19
Zm00001d016915_P002 Maize cytosol, plastid 69.91 69.02
TraesCS2A01G340000.1 Wheat cytosol 70.34 68.96
KXG26438 Sorghum cytosol 69.91 68.73
TraesCS2B01G337900.1 Wheat cytosol 69.91 68.54
Os02t0573200-01 Rice cytosol 70.2 68.25
TraesCS6D01G187200.1 Wheat cytosol 67.91 67.91
Zm00001d050850_P001 Maize cytosol 68.62 67.75
TraesCS6A01G203300.1 Wheat cytosol 67.62 67.62
HORVU2Hr1G079220.2 Barley cytosol 68.62 67.28
CDX75131 Canola cytosol 68.19 66.76
CDY54706 Canola cytosol 68.05 66.62
TraesCS6B01G224100.2 Wheat cytosol 64.76 66.08
HORVU6Hr1G049950.12 Barley cytosol, mitochondrion 67.34 65.83
GSMUA_Achr5P18570_001 Banana cytosol 47.99 50.07
GSMUA_AchrUn_... Banana cytosol, nucleus, peroxisome 46.28 49.24
GSMUA_Achr8P26060_001 Banana cytosol 20.2 27.06
GSMUA_Achr1P10510_001 Banana plastid 17.34 21.65
GSMUA_AchrUn_... Banana cytosol 3.15 15.49
GSMUA_Achr5P21430_001 Banana cytosol 9.17 14.04
GSMUA_AchrUn_... Banana plastid 6.16 13.23
Protein Annotations
Gene3D:1.10.579.10Gene3D:1.25.40.80MapMan:26.1.2.1.1Gene3D:3.40.50.620ncoils:CoilInterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sfInterPro:Cryptochr/Photolyase_FAD-bdInterPro:Cryptochrome/DNA_photolyase_1InterPro:Cryptochrome_CInterPro:Cryptochrome_plnInterPro:DNA_photolyase_1_CS_C
InterPro:DNA_photolyase_NGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004871
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005654GO:GO:0005737GO:GO:0006139GO:GO:0006464GO:GO:0006810
GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0007623GO:GO:0008150
GO:GO:0008152GO:GO:0008219GO:GO:0009414GO:GO:0009416GO:GO:0009583GO:GO:0009605
GO:GO:0009606GO:GO:0009607GO:GO:0009628GO:GO:0009637GO:GO:0009638GO:GO:0009640
GO:GO:0009644GO:GO:0009646GO:GO:0009653GO:GO:0009719GO:GO:0009785GO:GO:0009791
GO:GO:0009882GO:GO:0009987GO:GO:0009991GO:GO:0010075GO:GO:0010114GO:GO:0010117
GO:GO:0010118GO:GO:0010218GO:GO:0010244GO:GO:0010310GO:GO:0010343GO:GO:0010617
GO:GO:0016043GO:GO:0016049GO:GO:0016301GO:GO:0016604GO:GO:0016740GO:GO:0019538
GO:GO:0019725GO:GO:0038023GO:GO:0040007GO:GO:0042752GO:GO:0042802GO:GO:0046283
GO:GO:0046777GO:GO:0051510GO:GO:0055114GO:GO:0060918GO:GO:0071000GO:GO:0071949
GO:GO:0072387GO:GO:0099402GO:GO:1900426GO:GO:1901332GO:GO:1901371GO:GO:1901529
GO:GO:1901672GO:GO:1902347GO:GO:1902448GO:GO:2000377EnsemblPlantsGene:GSMUA_Achr6G02100_001EnsemblPlants:GSMUA_Achr6P02100_001
EnsemblPlants:GSMUA_Achr6T02100_001InterPro:IPR006050InterPro:IPR014729UniProt:M0T3F8PFAM:PF00875PFAM:PF03441
PFAM:PF12546PRINTS:PR00147ScanProsite:PS00394ScanProsite:PS00691PFscan:PS51645PANTHER:PTHR11455
PANTHER:PTHR11455:SF44InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF48173SUPFAM:SSF52425TIGRFAMs:TIGR02766UniParc:UPI0002968BE9
SEG:seg:::::
Description
Cryptochrome-1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G02100_001]
Coordinates
chr6:-:1347460..1351888
Molecular Weight (calculated)
78487.0 Da
IEP (calculated)
5.322
GRAVY (calculated)
-0.431
Length
698 amino acids
Sequence
(BLAST)
001: MPGGRGGSSS NNSSSNQTSV VWFRRDLRVE DNPALAAGVR AGAVVALYIW APEEEGSFYP GRVSRWWLSQ SLHHLDSSLR SLGTPLITKR SLDTASTLLE
101: VVRSTAATSL FFNHLYDPLS LVRDHGLKEL LTAQGIRVCS FNADLLYEPW EVNDENGQPF TTFAPFWNRC LSMPYDPAAP LLPPKRVVPG DVSGCPSDIL
201: VFEDESEKGS NALLARAWSP GWRNADKSLT SFINGPLIEY SVNRRKADSA STSLLSPHLH FGELSVRKVF HLVRMKQLVW TNEGNKAAEE SCDLFLKSIG
301: LREYSRYLSF NHPYSHEKPL LVHLRFFPWV IDEDYFKAWR QGRTGYPLVD AGMRELWATG WLHDRIRVVV ASFFVKVLQL PWRWGMKYFW DTLLDADLES
401: DALGWQYISG SLPDGRELDR IDNPQFEGYK FDPHGEYVRR WLPELARLPT QWIHHPWDAP ESVLQAAGVE LGSNYPLPIV EIAAAVARLQ EALAEMWQLE
501: AASRAALENG TEEGLGDSSE LPVIDFPREV YMEVEQEQLR INNSPASGRR HQDQMVPSMT SSLVRVEEEE VSTSSGNADA DSRAEVPSHT TYGLLPQREP
601: TDQAGMHTVR DNVTQHFNPT RLEMPEHSIG PSSGSWRERD SGVVPVWSPP TTSSCSGLLA TEDGGHPHSR QLMNWGQLSQ TRTRSWEVEN TLQPNAIG
Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)
001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G
Arabidopsis Description
CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.