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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra005541.1-P
Bra037880.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G08920.1 Bra005541.1-P AT2G32950.1 11509693
AT4G08920.1 Bra005541.1-P AT2G32950.1 11752373
AT4G08920.1 Bra037880.1-P AT4G08920.1 15805487
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY54706 Canola cytosol 100.0 95.37
AT4G08920.1 Thale cress cytosol 94.56 94.42
CDX75131 Canola cytosol 98.97 94.39
VIT_18s0001g05680.t01 Wine grape cytosol 80.29 79.02
PGSC0003DMT400022039 Potato cytosol, mitochondrion, plastid 67.5 78.73
Solyc12g057040.1.1 Tomato mitochondrion 67.35 78.56
KRH18908 Soybean cytosol 78.38 78.27
KRH16735 Soybean cytosol 78.24 78.12
KRH62344 Soybean cytosol 77.94 77.83
KRH53063 Soybean cytosol 77.94 77.71
Solyc04g074180.2.1 Tomato cytosol 77.5 77.61
Zm00001d028434_P001 Maize cytosol 18.97 70.49
Zm00001d015045_P001 Maize cytosol 19.26 70.05
Zm00001d005288_P001 Maize cytosol 17.65 69.77
Zm00001d015419_P001 Maize cytosol 16.91 69.7
GSMUA_Achr6P02100_001 Banana cytosol, plastid 69.71 67.91
Os04t0452100-02 Rice cytosol 68.53 66.57
TraesCS2D01G317500.1 Wheat cytosol 67.5 65.95
TraesCS6D01G187200.1 Wheat cytosol 67.35 65.62
TraesCS6A01G203300.1 Wheat cytosol 67.21 65.47
KXG30485 Sorghum cytosol 67.65 65.06
Zm00001d016915_P002 Maize cytosol, plastid 67.21 64.64
TraesCS2A01G340000.1 Wheat cytosol 67.65 64.61
Zm00001d003477_P001 Maize cytosol 65.0 64.24
TraesCS2B01G337900.1 Wheat cytosol 67.21 64.19
KXG26438 Sorghum cytosol 66.91 64.08
HORVU6Hr1G049950.12 Barley cytosol, mitochondrion 67.06 63.87
Zm00001d050850_P001 Maize cytosol 66.32 63.79
Os02t0573200-01 Rice cytosol 67.35 63.79
TraesCS6B01G224100.2 Wheat cytosol 63.97 63.6
HORVU2Hr1G079220.2 Barley cytosol 66.03 63.06
Bra015313.1-P Field mustard cytosol 45.88 54.07
Bra030568.1-P Field mustard cytosol 47.06 51.7
Bra021122.1-P Field mustard cytosol 12.35 25.61
Bra036524.1-P Field mustard plastid 18.68 23.01
Bra009798.1-P Field mustard cytosol 18.38 22.89
Bra004444.1-P Field mustard cytosol 10.59 15.82
Protein Annotations
Gene3D:1.10.579.10Gene3D:1.25.40.80MapMan:26.1.2.1.1Gene3D:3.40.50.620EnsemblPlantsGene:Bra037880EnsemblPlants:Bra037880.1
EnsemblPlants:Bra037880.1-Pncoils:CoilInterPro:Crypto/Photolyase_FAD-like_sfInterPro:Crypto/Photolyase_N_sfInterPro:Cryptochr/Photolyase_FAD-bdInterPro:Cryptochrome/DNA_photolyase_1
InterPro:Cryptochrome_CInterPro:Cryptochrome_plnInterPro:DNA_photolyase_1_CS_CInterPro:DNA_photolyase_NGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005737
GO:GO:0006139GO:GO:0006464GO:GO:0006810GO:GO:0006950GO:GO:0007154GO:GO:0007165
GO:GO:0007275GO:GO:0007623GO:GO:0008150GO:GO:0008152GO:GO:0008219GO:GO:0009414
GO:GO:0009416GO:GO:0009583GO:GO:0009605GO:GO:0009606GO:GO:0009607GO:GO:0009628
GO:GO:0009637GO:GO:0009638GO:GO:0009640GO:GO:0009644GO:GO:0009646GO:GO:0009653
GO:GO:0009719GO:GO:0009785GO:GO:0009791GO:GO:0009882GO:GO:0009987GO:GO:0009991
GO:GO:0010075GO:GO:0010114GO:GO:0010117GO:GO:0010118GO:GO:0010218GO:GO:0010244
GO:GO:0010310GO:GO:0010343GO:GO:0010617GO:GO:0016043GO:GO:0016049GO:GO:0016301
GO:GO:0016604GO:GO:0016740GO:GO:0019538GO:GO:0019725GO:GO:0038023GO:GO:0040007
GO:GO:0042752GO:GO:0042802GO:GO:0046283GO:GO:0046777GO:GO:0051510GO:GO:0055114
GO:GO:0060918GO:GO:0071000GO:GO:0071949GO:GO:0072387GO:GO:0099402GO:GO:1900426
GO:GO:1901332GO:GO:1901371GO:GO:1901529GO:GO:1901672GO:GO:1902347GO:GO:1902448
GO:GO:2000377InterPro:IPR006050InterPro:IPR014729UniProt:M4F9W6PFAM:PF00875PFAM:PF03441
PFAM:PF12546PRINTS:PR00147ScanProsite:PS00394ScanProsite:PS00691PFscan:PS51645PANTHER:PTHR11455
PANTHER:PTHR11455:SF44InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF48173SUPFAM:SSF52425TIGRFAMs:TIGR02766UniParc:UPI0000D74C4F
SEG:seg:::::
Description
AT4G08920 (E=0.0) CRY1, BLU1, HY4, OOP2, ATCRY1 | CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase
Coordinates
chrA09:+:10780000..10782549
Molecular Weight (calculated)
76744.8 Da
IEP (calculated)
5.040
GRAVY (calculated)
-0.472
Length
680 amino acids
Sequence
(BLAST)
001: MSNSCSGGGG CSIVWFRRDL RVEDNPALAA AVRAGPVIAV FVWAPEEEGH YQPGRVSRWW LKNSLAQLDS SLRSLGTCLI TKRSTDSVAS LLEVVKSTGA
101: SQIFFNHLYD PLSLVRDHRA KDALTAEGIA VKSFNADLLY EPWEVTDELG RPFSMFAAFW ERCLSMPYDP ESPLLPPKKI ISGDVSKCVA DTLIFEDESE
201: KGSNALLARA WSPGWSNADK ALTTFINGPL IEYSKNRRKA DSATTSFLSP HLHFGEVSVR KVFHLLRIKQ VAWANEGNQA GEESVNLFLK SIGLREYSRY
301: ISFNHPYSHE RPLLGHLKFF PWAVDENYFK AWRQGRTGYP LVDAGMRELW ATGWLHDRIR VVVSSFFVKV LQLPWRWGMK YFWDTLLDAD LESDALGWQY
401: ITGTLPDSRE FDRIDNPQFE GYKFDPNGEY VRRWLPELSR LPTEWIHHPW NAPESVLQAA GIELGSNYPR PIVGLDEAKA RLHEALSQMW QLEAASRAAI
501: ENGSEEGLGD STEFVEAPIE FPRDITMEET EPTRLNPVRR YEDQMVPSIT TSLIRPEEDQ ESSLSLRNSG GDSRAEVPRN MVNTNQARQQ EARADPVSNQ
601: VTAMIPEFNI RIVAENTEES TAESSSSGRR ERDGGIVPEW SGYSEQFASE ENGIGGGSTT SSYLQNHHEI VNWRRLSQTG
Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)
001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G
Arabidopsis Description
CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.