Factsheet for Bra021122.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20139	Canola	cytosol, nucleus, plastid	95.73	55.97
CDY21853	Canola	mitochondrion, plastid	89.63	52.13
AT3G15620.1	Thale cress	mitochondrion	81.71	48.2
VIT_09s0002g05990.t01	Wine grape	mitochondrion	71.95	43.87
Solyc12g042910.1.1	Tomato	mitochondrion	71.04	43.23
PGSC0003DMT400073684	Potato	mitochondrion	70.73	43.04
GSMUA_Achr8P26060_001	Banana	cytosol	65.24	41.07
KRH44412	Soybean	mitochondrion, plastid	70.43	41.03
TraesCS6D01G167100.1	Wheat	plastid	66.16	39.82
Os02t0204400-00	Rice	plastid	66.77	39.75
TraesCS6A01G177000.2	Wheat	mitochondrion, plastid	66.16	39.1
EES04723	Sorghum	cytosol, plastid	64.63	38.55
HORVU6Hr1G037460.6	Barley	plastid	66.77	37.89
Zm00001d015724_P001	Maize	plastid	26.83	24.18
Bra015313.1-P	Field mustard	cytosol	25.61	14.56
Bra030568.1-P	Field mustard	cytosol	25.61	13.57
Bra036524.1-P	Field mustard	plastid	21.34	12.68
Bra009798.1-P	Field mustard	cytosol	21.04	12.64
Bra037880.1-P	Field mustard	cytosol	25.61	12.35
Bra004444.1-P	Field mustard	cytosol	7.93	5.71

Protein Annotations

EnsemblPlants:Bra021122.1	EnsemblPlants:Bra021122.1-P	EnsemblPlantsGene:Bra021122	Gene3D:1.10.579.10	Gene3D:1.25.40.80	GO:GO:0003674
GO:GO:0003824	GO:GO:0003914	GO:GO:0008150	GO:GO:0009411	GO:GO:0009628	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Cryptochr/Photolyase_FAD-bd	PANTHER:PTHR11455	PANTHER:PTHR11455:SF9	PFAM:PF03441	SEG:seg	SUPFAM:SSF48173
UniParc:UPI0002543DB0	UniProt:M4DX76	MapMan:14.9.1	:	:	:

Description

AT3G15620 (E=3e-124) UVR3 | UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase

Coordinates

chrA01:+:23833691..23838402

Molecular Weight (calculated)

38439.4 Da

IEP (calculated)

9.834

GRAVY (calculated)

-0.600

Length

328 amino acids

Sequence
(BLAST)

001: MLNNRSISKK MVDLLGQAEW TPFRGGESEA LKRLHKSISD KAWVANFEKP KGDPSAFLKP ATTVLSPYLK LLWREFFYTT AFGTRNFDKM KGNPICKQIP
101: WKEDHDMLAA WRDGKTGYPW IDAIMVQLLK WGWMHHLARH SVACFLTRGD LFIHWEQGRD VFERLLIDSD WAINNGNWMW LSCSSFFYQA LPPPFYNRIY
201: SPVSFGKKYD PDGKYIRHFL PVLKDMPKQY IYEPWTAPLS VQTKAKCIVG KDYPKPMVMH DAASKECKRK MGEAYALNKK MNGNIGDDDL KDLRRKLETD
301: GESNIRNQRP KTQLKYLMRF DEIDIYKN

Best Arabidopsis Sequence Match ( AT3G15620.1 )
(BLAST)

001: MQRFCVCSPS SYRLNPITSM ATGSGSLIWF RKGLRVHDNP ALEYASKGSE FMYPVFVIDP HYMESDPSAF SPGSSRAGVN RIRFLLESLK DLDSSLKKLG
101: SRLLVFKGEP GEVLVRCLQE WKVKRLCFEY DTDPYYQALD VKVKDYASST GVEVFSPVSH TLFNPAHIIE KNGGKPPLSY QSFLKVAGEP SCAKSELVMS
201: YSSLPPIGDI GNLGISEVPS LEELGYKDDE QADWTPFRGG ESEALKRLTK SISDKAWVAN FEKPKGDPSA FLKPATTVMS PYLKFGCLSS RYFYQCLQNI
301: YKDVKKHTSP PVSLLGQLLW REFFYTTAFG TPNFDKMKGN RICKQIPWNE DHAMLAAWRD GKTGYPWIDA IMVQLLKWGW MHHLARHCVA CFLTRGDLFI
401: HWEQGRDVFE RLLIDSDWAI NNGNWMWLSC SSFFYQFNRI YSPISFGKKY DPDGKYIRHF LPVLKDMPKQ YIYEPWTAPL SVQTKANCIV GKDYPKPMVL
501: HDSASKECKR KMGEAYALNK KMDGKVDEEN LRDLRRKLQK DEHEESKIRN QRPKLK

Arabidopsis Description

UVR3(6-4)DNA photolyase [Source:UniProtKB/Swiss-Prot;Acc:O48652]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.