CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20139	Canola	cytosol, nucleus, plastid	93.44	93.94
Bra021122.1-P	Field mustard	cytosol	52.13	89.63
AT3G15620.1	Thale cress	mitochondrion	86.88	88.13
VIT_09s0002g05990.t01	Wine grape	mitochondrion	73.58	77.14
PGSC0003DMT400073684	Potato	mitochondrion	71.81	75.14
Solyc12g042910.1.1	Tomato	mitochondrion	71.28	74.58
KRH44412	Soybean	mitochondrion, plastid	70.39	70.52
GSMUA_Achr8P26060_001	Banana	cytosol	62.77	67.95
TraesCS6D01G167100.1	Wheat	plastid	62.94	65.14
Os02t0204400-00	Rice	plastid	62.41	63.88
EES04723	Sorghum	cytosol, plastid	61.88	63.45
TraesCS6A01G177000.2	Wheat	mitochondrion, plastid	62.41	63.42
HORVU6Hr1G037460.6	Barley	plastid	63.48	61.94
Zm00001d015724_P001	Maize	plastid	37.06	57.42
CDX89827	Canola	cytosol, mitochondrion	20.92	27.19
CDY18229	Canola	cytosol, mitochondrion	26.06	25.52
CDX86636	Canola	cytosol	26.06	23.75
CDY15503	Canola	cytosol	25.53	23.19
CDX87114	Canola	golgi	21.1	22.71
CDX88137	Canola	plastid	22.34	22.18
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	22.52	22.09
CDY19825	Canola	plastid	22.7	21.09
CDY54706	Canola	cytosol	26.24	20.76
CDX75131	Canola	cytosol	26.24	20.76
CDY71211	Canola	cytosol	15.25	19.07
CDY71236	Canola	cytosol	15.25	18.9
CDX80473	Canola	plastid	22.7	15.69
CDX80119	Canola	endoplasmic reticulum	13.65	14.08

Protein Annotations

Gene3D:1.10.579.10	MapMan:14.9.1	Gene3D:3.40.50.620	UniProt:A0A078GAW2	EnsemblPlants:CDY21853	ProteinID:CDY21853
ProteinID:CDY21853.1	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:DNA_photolyase_N	EnsemblPlantsGene:GSBRNA2T00018156001
InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441	PFscan:PS51645	PANTHER:PTHR11455
PANTHER:PTHR11455:SF9	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	UniParc:UPI0004EEB810	SEG:seg

Description

BnaC01g35950DBnaC01g35950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAW2]

Coordinates

chrLK032125:-:311858..314651

Molecular Weight (calculated)

64492.4 Da

IEP (calculated)

9.134

GRAVY (calculated)

-0.478

Length

564 amino acids

Sequence
(BLAST)

001: MRRLPSSVCS PSSHRLNPVT SMATGSNSLI WFRKGLRVHD NPALEHASKA SSGSMYPVFV IDPRYMEPDP SAFSPGSSRA GVNRIRFLLE SLKDLDSGLK
101: KLGSRLLVLR GEPGEVLVRC LREWKVKRLC FEYDTDPYYQ ALDFKVKEYA SSVGVEVFSP VSHTLFNPTD IIQKNGGKAP LSYQSFLKIA GEPSCAESEL
201: LMSYSSLPPI GDVGSIGVSE VPKLEELGYR EDEQDEWTPF RGGESEALER LTKSISDKAW VANFEKPKGD PSALLKPATT VLSPYLKKFG CLSSRYFYQC
301: LQRVYKDMKK HTSPPVSLLG QLLWREFFYT TAFGTRNFDK MKGNPICKQI PWKEDHDMLA AWRDGKTGYP WIDAIMVQLL KWGWMHHLAR HSVACFLTRG
401: DLFIHWEQGR DVFERLLIDS DWAINNGNWM WLSCSSFFYQ ALPPPFYNRI YSPVSFGKKY DPEGKYIRHF LPVLKDMPKQ YIYEPWTAPL SVQTKAKCIV
501: GKDYPKPMVM HDAASKECKR KMGEAYALNK KMNGNIGDDD LKDLRRKLET DEESNIRNQR PKLN

Best Arabidopsis Sequence Match ( AT3G15620.1 )
(BLAST)

001: MQRFCVCSPS SYRLNPITSM ATGSGSLIWF RKGLRVHDNP ALEYASKGSE FMYPVFVIDP HYMESDPSAF SPGSSRAGVN RIRFLLESLK DLDSSLKKLG
101: SRLLVFKGEP GEVLVRCLQE WKVKRLCFEY DTDPYYQALD VKVKDYASST GVEVFSPVSH TLFNPAHIIE KNGGKPPLSY QSFLKVAGEP SCAKSELVMS
201: YSSLPPIGDI GNLGISEVPS LEELGYKDDE QADWTPFRGG ESEALKRLTK SISDKAWVAN FEKPKGDPSA FLKPATTVMS PYLKFGCLSS RYFYQCLQNI
301: YKDVKKHTSP PVSLLGQLLW REFFYTTAFG TPNFDKMKGN RICKQIPWNE DHAMLAAWRD GKTGYPWIDA IMVQLLKWGW MHHLARHCVA CFLTRGDLFI
401: HWEQGRDVFE RLLIDSDWAI NNGNWMWLSC SSFFYQFNRI YSPISFGKKY DPDGKYIRHF LPVLKDMPKQ YIYEPWTAPL SVQTKANCIV GKDYPKPMVL
501: HDSASKECKR KMGEAYALNK KMDGKVDEEN LRDLRRKLQK DEHEESKIRN QRPKLK

Arabidopsis Description

UVR3(6-4)DNA photolyase [Source:UniProtKB/Swiss-Prot;Acc:O48652]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.