CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, plastid
BaCelLo:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	81.87	74.61
CDX88137	Canola	plastid	80.15	73.94
CDY19825	Canola	plastid	83.59	72.16
AT5G24850.1	Thale cress	plastid	77.29	71.18
PGSC0003DMT400076096	Potato	cytosol, plastid	58.59	56.33
KRH61917	Soybean	plastid	62.02	55.65
VIT_04s0008g02670.t01	Wine grape	plastid	59.35	53.07
Solyc08g074270.2.1	Tomato	nucleus	58.02	52.69
GSMUA_Achr1P10510_001	Banana	plastid	56.11	52.59
Os06t0661800-01	Rice	plastid	58.02	52.41
EER90163	Sorghum	plastid	57.25	51.99
HORVU7Hr1G109800.2	Barley	plastid	58.78	51.94
CDX80473	Canola	plastid	80.53	51.72
TraesCS7A01G489800.1	Wheat	plastid	57.82	51.1
TraesCS7D01G476200.1	Wheat	plastid	57.44	50.42
TraesCS7B01G392900.2	Wheat	plastid	57.44	50.33
Zm00001d046935_P001	Maize	plastid	51.15	49.63
CDY71211	Canola	cytosol	21.95	25.5
CDY71236	Canola	cytosol	22.14	25.49
CDX89827	Canola	cytosol, mitochondrion	18.13	21.89
CDY20139	Canola	cytosol, nucleus, plastid	22.9	21.39
CDY21853	Canola	mitochondrion, plastid	22.71	21.1
CDY18229	Canola	cytosol, mitochondrion	21.37	19.44
CDX80119	Canola	endoplasmic reticulum	20.04	19.2
CDX86636	Canola	cytosol	21.95	18.58
CDY15503	Canola	cytosol	21.95	18.52
CDY54706	Canola	cytosol	22.14	16.27
CDX75131	Canola	cytosol	22.14	16.27

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	GO:A0A078DFF2	EnsemblPlants:CDX87114
ProteinID:CDX87114	ProteinID:CDX87114.1	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd
InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0003913	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00146018001	InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147
PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425
TIGRFAMs:TIGR02765	UniParc:UPI0004EE6EAC	SEG:seg	:	:	:

Description

BnaC09g04290D

Coordinates

chrLK031849:+:544741..551094

Molecular Weight (calculated)

60606.8 Da

IEP (calculated)

9.548

GRAVY (calculated)

-0.535

Length

524 amino acids

Sequence
(BLAST)

001: METKYLRIFT FIFFKKIDLK KKTKKEQKKA TNRFENIHFH PRKKYPIFRN SNSRGATGCC RWNILEEAFC IYIVLCCNVL ALRGAFLMEC LADLRKNLMR
101: RGLNLLIRSG KPEDILPSLA KDFGAHTVFA HKETCSEELH VERLVDKALK RVGNGTKLEL IWGSTMYHKD DLPFDVLELP DIYTQFRKSV EANCRIRSST
201: RIPVSIGPTP CVDNWGDVPT LGQLGLEPQE VTRGMRFVGG ESAGLGRSVH KGCMSVFYLQ DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV
301: QRYERERVAN NSTYWVLFEL LWRDYFRFLS IKCGNSLFHL GGPRNVQGEW SQDKRLFESW RDGKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG
401: LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN YDPEGEYVAF WVQQLRRLPK EKRHWPGRLM YMDTVVPLKH GHGGGNAQTS
501: RGSKSRGGFR DNHSGRPSFK KTEN

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.