Factsheet for TraesCS7B01G392900.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G489800.1	Wheat	plastid	94.65	95.45
HORVU7Hr1G109800.2	Barley	plastid	92.64	93.42
TraesCS7D01G476200.1	Wheat	plastid	93.14	93.3
Os06t0661800-01	Rice	plastid	81.61	84.14
EER90163	Sorghum	plastid	79.26	82.15
Zm00001d046935_P001	Maize	plastid	72.24	80.0
GSMUA_Achr1P10510_001	Banana	plastid	63.04	67.44
PGSC0003DMT400076096	Potato	cytosol, plastid	58.86	64.59
VIT_04s0008g02670.t01	Wine grape	plastid	62.37	63.65
KRH61917	Soybean	plastid	62.04	63.53
Solyc08g074270.2.1	Tomato	nucleus	59.53	61.7
AT5G24850.1	Thale cress	plastid	58.7	61.69
Bra036524.1-P	Field mustard	plastid	56.19	60.87
Bra009798.1-P	Field mustard	cytosol	54.35	59.52
CDX88137	Canola	plastid	55.52	58.45
CDX87114	Canola	golgi	50.33	57.44
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	53.51	55.65
CDY19825	Canola	plastid	56.19	55.35
CDX80473	Canola	plastid	57.36	42.03
TraesCS7B01G238500.1	Wheat	cytosol, plastid	22.74	30.29
TraesCS6B01G257600.2	Wheat	cytosol	22.58	20.77
TraesCS6B01G224100.2	Wheat	cytosol	20.9	18.27
TraesCS2B01G337900.1	Wheat	cytosol	20.9	17.56

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0003913	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441
PRINTS:PR00147	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173
SUPFAM:SSF52425	TIGRFAMs:TIGR02765	EnsemblPlantsGene:TraesCS7B01G392900	EnsemblPlants:TraesCS7B01G392900.2	SEG:seg	:

Description

No Description!

Coordinates

chr7B:+:659649801..659652918

Molecular Weight (calculated)

66337.3 Da

IEP (calculated)

9.954

GRAVY (calculated)

-0.346

Length

598 amino acids

Sequence
(BLAST)

001: MLHHHLLSSS ASSFPPAAAQ SLLLLPRPPA AILRALISMA ASTSSSIPFR PPRAVLAAAV PSLGAEETAA AADEAFRRHT SPGLRRAVGA GGVAVVWFRS
101: DLRVLDNEAL ARAWAASGVV LPVYCVDPRA LAGATHRFGF PKTGALRAQF LIECLGDLKR NLQKRGLDLL VRHGKPEDIL PAIAKAVSAH TVYAHKETCS
201: EELLVERLVR RGLEQVVLPQ GQGGASGRNN RPLSPKLQLV WGATMYHTDD LPFPVSNLPD VYTQFRKAVE SKSSVRSCGK LPPSLGPAPG SGLDELGGWG
301: SIPTLESLGL SVTKAEKGMR FVGGESAALG RVHEYFWKND QVKVYKETRN GMLGPDYSTK FSPWLASGSL SPRYVCEEVK RYEKQQVAND STYWVLFELI
401: WRDYFRFLSA KYGNSIFHLG GPRKVASKWS QDEALFESWK DGRTGYPLID ANMKELLATG FMSNRGRQIV CSFLVRDMGI DWRMGAEWFE TCLLDYDPAS
501: NYGNWTYGAA GPLTGVGNDP REDRYFSIPK QAKTYDPDGK YVAYWLPELR SLAKERRNFP GASYIKQVVP LKFDGGHQRK DQQFNRQTRP KNIYRRQK

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.