Factsheet for Zm00001d046935_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90163	Sorghum	plastid	93.33	87.35
Os06t0661800-01	Rice	plastid	82.04	76.38
TraesCS7A01G489800.1	Wheat	plastid	81.3	74.03
HORVU7Hr1G109800.2	Barley	plastid	81.3	74.03
TraesCS7D01G476200.1	Wheat	plastid	81.3	73.53
TraesCS7B01G392900.2	Wheat	plastid	80.0	72.24
GSMUA_Achr1P10510_001	Banana	plastid	63.52	61.36
PGSC0003DMT400076096	Potato	cytosol, plastid	59.44	58.9
VIT_04s0008g02670.t01	Wine grape	plastid	63.7	58.7
KRH61917	Soybean	plastid	62.78	58.05
Solyc08g074270.2.1	Tomato	nucleus	60.37	56.5
AT5G24850.1	Thale cress	plastid	59.07	56.06
Bra036524.1-P	Field mustard	plastid	56.67	55.43
Bra009798.1-P	Field mustard	cytosol	54.63	54.03
CDX88137	Canola	plastid	55.93	53.17
CDX87114	Canola	golgi	49.63	51.15
CDY19825	Canola	plastid	56.11	49.92
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	53.15	49.91
CDX80473	Canola	plastid	57.59	38.11
Zm00001d029105_P001	Maize	plastid	21.48	26.01
Zm00001d047501_P001	Maize	plastid	21.11	25.56
Zm00001d015724_P001	Maize	plastid	14.26	21.15
Zm00001d015045_P001	Maize	cytosol	6.67	19.25
Zm00001d045944_P007	Maize	cytosol	22.41	18.5
Zm00001d003477_P001	Maize	cytosol	23.33	18.31
Zm00001d016915_P002	Maize	cytosol, plastid	23.89	18.25
Zm00001d050850_P001	Maize	cytosol	23.33	17.82
Zm00001d005288_P001	Maize	cytosol	3.89	12.21
Zm00001d015419_P001	Maize	cytosol	3.15	10.3
Zm00001d028434_P001	Maize	cytosol	2.96	8.74

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	UniProt:A0A1D6P5I6	ProteinID:AQL05208.1
InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N
InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147	ScanProsite:PS00394
PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425
UniParc:UPI000843895E	EnsemblPlantsGene:Zm00001d046935	EnsemblPlants:Zm00001d046935_P001	EnsemblPlants:Zm00001d046935_T001	SEG:seg	:

Description

cryptochrome 3

Coordinates

chr9:-:111766412..111777865

Molecular Weight (calculated)

60521.4 Da

IEP (calculated)

9.770

GRAVY (calculated)

-0.338

Length

540 amino acids

Sequence
(BLAST)

001: MLHYISSSPL RPRFLLLPSP PSNLRFLTMS ASPSSSSSRS VRGAAVSVPS LGADEACAVA DEAFRRYTSP SLLRRGGVGV AVVWFRNDLR VIDNEALLRA
101: WAASEAVLPV YCVDPRVFAG STHYFGFPKK GALRAQFLIE CLGDLKQSLR KKGLDLLVRH GKPEEILPSI AKAVSAHTIY AHKETCSEEL LVERLVSKGL
201: EQVQIAQGGA SVPKRPLNPR LQLIWGATMY HIDDLPFPVS SLPDVYTQFR KAVESKCSVR NCAKLPTSLG PPPSSSIDEI GGWGTVPTLE SLGPSVTKAG
301: LASEKGMHFI GGESAALGRV HEYFWKKDQL KDYKVTRNGM VLFELIWRDY FRFLSAKYGN AIFHLGGPRK VVSKWSQDQA LFESWRDGRT GYPLIDANMR
401: ELSATGYMSN RGRQIVCSFL VRDMGVDWRM GAEWFETCLL DYDPASNYGN WTYGAGVGND PREDRYFSIP KQAKSYDPEG EYVAYWLPEL RSLAKERRNF
501: PGASYIRQVV PLKFDGGNQR KDQQFNRQRR PNNVYIRQVK

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.