Factsheet for Zm00001d029105_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94877	Sorghum	cytosol, plastid	97.31	97.09
Zm00001d047501_P001	Maize	plastid	95.07	95.07
TraesCS7A01G344600.1	Wheat	plastid	85.2	85.01
Os03t0343400-01	Rice	cytosol, nucleus, peroxisome, plastid	86.55	84.1
TraesCS7D01G334900.2	Wheat	plastid	83.86	83.86
TraesCS7B01G238500.1	Wheat	cytosol, plastid	78.03	77.51
HORVU7Hr1G080580.2	Barley	plastid	80.04	74.07
GSMUA_AchrUn_...	Banana	cytosol	19.51	61.27
GSMUA_Achr5P21430_001	Banana	cytosol	57.4	56.14
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	54.93	55.68
GSMUA_AchrUn_...	Banana	plastid	38.56	52.92
Solyc09g075180.2.1	Tomato	cytosol	51.57	50.88
PGSC0003DMT400081378	Potato	cytosol	51.35	50.55
KRH69286	Soybean	plastid	52.24	50.11
VIT_07s0005g00590.t01	Wine grape	cytosol	50.67	49.78
AT2G47590.1	Thale cress	cytosol	48.65	48.55
CDY71211	Canola	cytosol	48.43	47.89
CDY71236	Canola	cytosol	48.21	47.25
Bra004444.1-P	Field mustard	cytosol	47.98	47.03
CDX80119	Canola	endoplasmic reticulum	39.91	32.54
Zm00001d046935_P001	Maize	plastid	26.01	21.48
Zm00001d015724_P001	Maize	plastid	16.59	20.33
Zm00001d005288_P001	Maize	cytosol	5.61	14.53
Zm00001d015045_P001	Maize	cytosol	5.83	13.9
Zm00001d028434_P001	Maize	cytosol	5.61	13.66
Zm00001d015419_P001	Maize	cytosol	4.93	13.33
Zm00001d050850_P001	Maize	cytosol	17.04	10.75
Zm00001d016915_P002	Maize	cytosol, plastid	16.37	10.33
Zm00001d045944_P007	Maize	cytosol	14.8	10.09
Zm00001d003477_P001	Maize	cytosol	15.47	10.03

Protein Annotations

Gene3D:1.25.40.80	EntrezGene:100192113	Gene3D:3.40.50.620	MapMan:35.1	UniProt:B4FBD9	EMBL:BT034427
EMBL:BT039827	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003735
GO:GO:0003824	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016829	GO:GO:0019538	InterPro:IPR006050	InterPro:IPR014729	ProteinID:ONL97927.1	PFAM:PF00875
PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF2	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425
UniParc:UPI00017B68C3	EnsemblPlantsGene:Zm00001d029105	EnsemblPlants:Zm00001d029105_P001	EnsemblPlants:Zm00001d029105_T001	SEG:seg	:

Description

Blue-light photoreceptor PHR2

Coordinates

chr1:+:58197901..58201581

Molecular Weight (calculated)

48133.2 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.252

Length

446 amino acids

Sequence
(BLAST)

001: MATASGTDAG AQPRDDPSLL PFASFSLGLS IRAPATPTLA SVPSTLHLPT QISTLAVCLH PSAAQPSSRR TTRLNSATSS VIAPLPSSTP GLSRSFPSGA
101: PAAAGRRRTL VWFRADLRLH DHEPFHAAAG ASSSLLPVFV FDPRDFGKSP SGFDRTGPYR ANFLLDSVAD LRRSLRARGG DLVVRVGRPE VVIPELARAA
201: GAEAVYAHGE VSRDEVRAEE RVQKAVEKEG INVKYFWGST LYHVEDLPFR LEDMPSNYGG FREAVKGLEV RKVLEAPEEV KCVPMKNVLE PGDIPTLAEL
301: GLTAPPAMSQ DSKPAVGSTL IGGETEALER LKKFAAECSM QPNKVDKSNT QDSIYGANFS CKISPWLATG CLSPRFMYEE LKKHATKAIP FGSTPKNNDG
401: TSDAGTNWLM FELLWRDFFR FITKKYSSVQ KTSEVATGCT PAPALA

Best Arabidopsis Sequence Match ( AT2G47590.1 )
(BLAST)

001: MDSSNVEENL NPETKSAEEQ NPLAIFHSSL PIASLSLTLF PSSTQFLKLF AHHPNKVKIP TQASSLTHLS LSSVSPFPSS RISFKSTIAA NPLQSPLSIV
101: PRRPVDPSSA AALRRAAVVW FRNDLRVHDN ECLNSANDEC VSVLPVYCFD PRDYGKSSSG FDKTGPFRAQ FLIESVSELR KNLQARGSNL VVRVGKPEAV
201: LVELAKEIGA DAVYAHREVS HDEVKAEGKI ETAMKEEGVE VKYFWGSTLY HLDDLPFKIE DLPSNYGAFK DKVQKLEIRK TIAALDQLKS LPSRGDVELG
301: DIPSLLDLGI SPTPRTSQEG KPTMVGGETE ALTRLKSFAA DCQARLSKGN QKGGNNSVFG ANFSCKISPW LAMGSISPRS MFDELKKTIS ASTTSTTPRN
401: GPGDTGLNWL MYELLWRDFF RFITKKYSSA KTQVEAGPAT ACTGAFA

Arabidopsis Description

PHR2At2g47590 [Source:UniProtKB/TrEMBL;Acc:Q058P5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.