CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029105_P001	Maize	plastid	97.09	97.31
Zm00001d047501_P001	Maize	plastid	95.97	96.19
TraesCS7A01G344600.1	Wheat	plastid	85.23	85.23
Os03t0343400-01	Rice	cytosol, nucleus, peroxisome, plastid	87.25	84.97
TraesCS7D01G334900.2	Wheat	plastid	84.34	84.53
TraesCS7B01G238500.1	Wheat	cytosol, plastid	78.75	78.4
HORVU7Hr1G080580.2	Barley	plastid	80.31	74.48
GSMUA_AchrUn_...	Banana	cytosol	19.69	61.97
GSMUA_Achr5P21430_001	Banana	cytosol	57.05	55.92
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	54.59	55.45
GSMUA_AchrUn_...	Banana	plastid	38.03	52.31
Solyc09g075180.2.1	Tomato	cytosol	51.68	51.11
PGSC0003DMT400081378	Potato	cytosol	51.68	50.99
VIT_07s0005g00590.t01	Wine grape	cytosol	50.56	49.78
KRH69286	Soybean	plastid	51.68	49.68
AT2G47590.1	Thale cress	cytosol	48.1	48.1
CDY71211	Canola	cytosol	47.65	47.23
CDY71236	Canola	cytosol	47.65	46.81
Bra004444.1-P	Field mustard	cytosol	47.43	46.59
CDX80119	Canola	endoplasmic reticulum	39.37	32.18
EER90163	Sorghum	plastid	29.98	23.22
EES04723	Sorghum	cytosol, plastid	18.34	14.91
KXG30485	Sorghum	cytosol	16.78	10.61
KXG26438	Sorghum	cytosol	16.33	10.28
EER88355	Sorghum	mitochondrion	14.77	10.09

Protein Annotations

Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	EntrezGene:8083647	UniProt:C5X0P3	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:DNA_photolyase_N	EnsemblPlants:EER94877	ProteinID:EER94877	ProteinID:EER94877.1	InterPro:IPR006050
InterPro:IPR014729	PFAM:PF00875	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF2	InterPro:Rossmann-like_a/b/a_fold
EnsemblPlantsGene:SORBI_3001G376700	SUPFAM:SSF48173	SUPFAM:SSF52425	unigene:Sbi.1341	UniParc:UPI0001A82D7C	RefSeq:XP_002467879.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:66521713..66525260

Molecular Weight (calculated)

48288.4 Da

IEP (calculated)

8.138

GRAVY (calculated)

-0.250

Length

447 amino acids

Sequence
(BLAST)

001: MAAASDSDAG AQQPRDDPSL LPFASFSLAL SIRAPATPTL ASVPSTIHLP TQISTLAVCL HPSAAQPPSR RPTRLNSATS SVIAPLPSST PGLSRSFPSG
101: APAAAGRRRT LVWFRADLRL HDHEPFHAAA GASSSLLPVF VFDPRDFGKS PSGFDRTGPY RANFLLDSVA DLRRSLRARG GDLVVRVGRP EVVIPELARA
201: AGAEAVYAHG EVSRDEVRAE ERVQKAVEKE GINVKYFWGS TLYHVEDLPF HLEDMPSNYG GFREAVKGLE VRKVLEAPEE VKCVPMKNVL EPGDIPTLAE
301: LGLTAPPAMA QDSKPAVGST LIGGETEALE RLKKFAVECS MQPNKADKSN TQDSIYGANF SCKISPWLAT GCLSPRFMYE ELKKHATRAI PFGSTPKNND
401: GTSDAGTNWL MFELLWRDFF RFITKKYSSV QKTSEVATGC TPAPALA

Best Arabidopsis Sequence Match ( AT2G47590.1 )
(BLAST)

001: MDSSNVEENL NPETKSAEEQ NPLAIFHSSL PIASLSLTLF PSSTQFLKLF AHHPNKVKIP TQASSLTHLS LSSVSPFPSS RISFKSTIAA NPLQSPLSIV
101: PRRPVDPSSA AALRRAAVVW FRNDLRVHDN ECLNSANDEC VSVLPVYCFD PRDYGKSSSG FDKTGPFRAQ FLIESVSELR KNLQARGSNL VVRVGKPEAV
201: LVELAKEIGA DAVYAHREVS HDEVKAEGKI ETAMKEEGVE VKYFWGSTLY HLDDLPFKIE DLPSNYGAFK DKVQKLEIRK TIAALDQLKS LPSRGDVELG
301: DIPSLLDLGI SPTPRTSQEG KPTMVGGETE ALTRLKSFAA DCQARLSKGN QKGGNNSVFG ANFSCKISPW LAMGSISPRS MFDELKKTIS ASTTSTTPRN
401: GPGDTGLNWL MYELLWRDFF RFITKKYSSA KTQVEAGPAT ACTGAFA

Arabidopsis Description

PHR2At2g47590 [Source:UniProtKB/TrEMBL;Acc:Q058P5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.