CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046935_P001	Maize	plastid	87.35	93.33
Os06t0661800-01	Rice	plastid	84.75	84.31
HORVU7Hr1G109800.2	Barley	plastid	83.71	81.45
TraesCS7A01G489800.1	Wheat	plastid	83.71	81.45
TraesCS7D01G476200.1	Wheat	plastid	82.84	80.07
TraesCS7B01G392900.2	Wheat	plastid	82.15	79.26
GSMUA_Achr1P10510_001	Banana	plastid	66.55	68.69
PGSC0003DMT400076096	Potato	cytosol, plastid	62.74	66.42
VIT_04s0008g02670.t01	Wine grape	plastid	65.86	64.85
KRH61917	Soybean	plastid	65.16	64.38
Solyc08g074270.2.1	Tomato	nucleus	63.08	63.08
AT5G24850.1	Thale cress	plastid	61.18	62.04
Bra036524.1-P	Field mustard	plastid	58.41	61.05
Bra009798.1-P	Field mustard	cytosol	56.85	60.07
CDX88137	Canola	plastid	57.89	58.8
CDX87114	Canola	golgi	51.99	57.25
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	55.63	55.83
CDY19825	Canola	plastid	58.23	55.35
CDX80473	Canola	plastid	59.62	42.16
EER94877	Sorghum	cytosol, plastid	23.22	29.98
EES04723	Sorghum	cytosol, plastid	23.4	24.55
EER88355	Sorghum	mitochondrion	22.7	20.03
KXG30485	Sorghum	cytosol	23.74	19.38
KXG26438	Sorghum	cytosol	23.57	19.15

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	EntrezGene:8069379	UniProt:C5Z7B4
ncoils:Coil	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1
InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	EnsemblPlants:EER90163	ProteinID:EER90163	ProteinID:EER90163.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0003913	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875
PFAM:PF03441	PRINTS:PR00147	ScanProsite:PS00394	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22
InterPro:Rossmann-like_a/b/a_fold	EnsemblPlantsGene:SORBI_3010G218200	SUPFAM:SSF48173	SUPFAM:SSF52425	unigene:Sbi.3053	TIGRFAMs:TIGR02765
UniParc:UPI0001A89B45	RefSeq:XP_002438796.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:56100666..56104151

Molecular Weight (calculated)

65086.8 Da

IEP (calculated)

9.771

GRAVY (calculated)

-0.381

Length

577 amino acids

Sequence
(BLAST)

001: MLHFISSSPL RPRFLLLPSP PSNLRFLAMS AAPSSSSSRS VRGVAVPVPS LSAGEACAVA DEAFQRYTSP SLRRGGAGVA VVWFRNDLRV LDNEALLRAW
101: SASEAVLPVY CVDPRVFAGS THYFGFPKTG ALRAQFLIEC LGDLKQILRK KGLDLLVRHG KPEEILPSIA KAVSAHTIYA HKETCSEELL VERLVSKGLE
201: QVQIAQGGAS VPKKPLNPRL QLIWGATMYH IDDLPFPVSN LPDVYTQFRK AVESKSSVRN CTKLPPSLGP LPSSSIDEIG GWGAIPTLES LGLSVTKSEK
301: GMHFIGGENA ALGRVHEYFW KKDQLKDYKV TRNGMLGPDY STKFSPWLAS GSLSPRYICE EVKRYEKQRV ANDSTYWVLF ELIWRDYFRF LSAKYGNTIF
401: HLGGPRKVVS KWSQDQALFE SWRDGRTGYP LIDANMRELS ATGFMSNRGR QIVCSFLVRD MGIDWRMGAE WFETCLLDYD PASNYGNWTY GAGVGNDPRE
501: DRYFSIPKQA KSYDPEGEYV AYWLPELRSL AKERRNFPGA SYIRQIVQLK FDGGNQKKDQ QFNRQRRPNN MYRRQVK

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.