CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19825	Canola	plastid	90.78	86.0
CDX87114	Canola	golgi	74.61	81.87
CDX88137	Canola	plastid	78.09	79.05
AT5G24850.1	Thale cress	plastid	75.3	76.1
CDX80473	Canola	plastid	91.83	64.71
PGSC0003DMT400076096	Potato	cytosol, plastid	57.91	61.1
KRH61917	Soybean	plastid	61.74	60.79
VIT_04s0008g02670.t01	Wine grape	plastid	58.96	57.85
Solyc08g074270.2.1	Tomato	nucleus	57.22	57.02
Os06t0661800-01	Rice	plastid	57.04	56.55
GSMUA_Achr1P10510_001	Banana	plastid	54.26	55.81
EER90163	Sorghum	plastid	55.83	55.63
HORVU7Hr1G109800.2	Barley	plastid	56.7	54.97
TraesCS7A01G489800.1	Wheat	plastid	56.35	54.64
TraesCS7B01G392900.2	Wheat	plastid	55.65	53.51
TraesCS7D01G476200.1	Wheat	plastid	55.48	53.43
Zm00001d046935_P001	Maize	plastid	49.91	53.15
CDY71211	Canola	cytosol	21.57	27.49
CDY71236	Canola	cytosol	21.57	27.25
CDX89827	Canola	cytosol, mitochondrion	17.74	23.5
CDY20139	Canola	cytosol, nucleus, plastid	22.26	22.82
CDY21853	Canola	mitochondrion, plastid	22.09	22.52
CDX80119	Canola	endoplasmic reticulum	19.65	20.66
CDY18229	Canola	cytosol, mitochondrion	20.52	20.49
CDX86636	Canola	cytosol	21.04	19.55
CDY15503	Canola	cytosol	21.04	19.48
CDY54706	Canola	cytosol	21.74	17.53
CDX75131	Canola	cytosol	21.74	17.53

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:16.6.7.1.1	Gene3D:3.40.50.150	Gene3D:3.40.50.620	GO:A0A078DD37
EnsemblPlants:CDX87110	ProteinID:CDX87110	ProteinID:CDX87110.1	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0003913
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006400	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008176	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00146012001	InterPro:IPR003358
InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF02390	PFAM:PF03441	PRINTS:PR00147
PFscan:PS51625	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold	InterPro:SAM-dependent_MTases
SUPFAM:SSF48173	SUPFAM:SSF52425	SUPFAM:SSF53335	TIGRFAMs:TIGR02765	UniPathway:UPA00989	UniParc:UPI0004EDF0F1
SEG:seg	InterPro:tRNA_(Gua-N-7)_MeTrfase_Trmb	:	:	:	:

Description

BnaC09g04250D

Coordinates

chrLK031849:+:510310..518529

Molecular Weight (calculated)

65719.7 Da

IEP (calculated)

8.657

GRAVY (calculated)

-0.445

Length

575 amino acids

Sequence
(BLAST)

001: MNGNIHRVPG TTILWFRNDL RVLDNDALYK AWSSSDTLLP VYCLDPRLFH TTHFFSFPKT GALRGAFLME CLADLRKNLM RRGLNLLIRS GKPEDILPSL
101: AKDFGAHTVF AHKETCSEEL YVERLVDKAL KRVGNGTKLE LIWGSTMYHK DDLPFDVLDL PDIYTQFRKS VEANCRIRSS TRIPVSIGPT PCVDNWGDVP
201: TLGQLGLEPQ EVTRGMRFVG GESAGLGRDL LKVYKETRNG MLGPDYSTKF SPWLAFGCIS PRFIYEEVQR YERERIANNS TYWVLFELLW MDYFRFLSIK
301: CGNSLFHLGG PRDVQGEWSQ DKRLFESWRD GKTGYPLIDA NMKELSTTGF MSNRGRQIVC SFLVRDMGLD WRMGAEWFET CLLDYDPCSN YGNWTYGAGV
401: GNDPREDRYF SIPKQAQNYD PEGEYVAFWV QQLRRLPKEK RHWPGRLMYM DTVVPLKHGH GGGNAQASRV PKSRGGFRDN HSGRPSSKKT EFADIGCGFG
501: GLLISLATLF PETLMIGMEL RDKVTEYVKE RILALRKTSS GGGEYENISV VRTNSMKYVP NYFEKGQLSK TTQYV

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.