CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69067
CDX75440
CDX75900
CDX76288
CDX82382
CDX86636
CDX89827
CDX92112
CDX95888
CDY12145
CDY15503
CDY17466
CDY18229
CDY25880
CDY50512
CDY52540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	CDX86636	AT1G04400.1	15805487
AT1G04400.1	CDX89827	AT1G04400.1	15805487
AT1G04400.1	CDY15503	AT1G04400.1	15805487
AT1G04400.1	CDY18229	AT1G04400.1	15805487
AT1G04400.1	CDY25880	AT1G53090.1	22739826
AT1G04400.1	CDY50512	AT1G53090.1	22739826
AT1G04400.1	CDX75900	AT2G18790.1	11089975
AT1G04400.1	CDX82382	AT2G18790.1	11089975
AT1G04400.1	CDX92112	AT2G18790.1	11089975
AT1G04400.1	CDX95888	AT2G18790.1	11089975
AT1G04400.1	CDY12145	AT2G32950.1	11509693
AT1G04400.1	CDY52540	AT2G32950.1	11509693
AT1G04400.1	CDY12145	AT2G32950.1	22739826
AT1G04400.1	CDY52540	AT2G32950.1	22739826
AT1G04400.1	CDX69067	AT4G34530.1	22739826
AT1G04400.1	CDX75440	AT4G34530.1	22739826
AT1G04400.1	CDX76288	AT4G34530.1	22739826
AT1G04400.1	CDY17466	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015313.1-P	Field mustard	cytosol	95.62	71.92
CDY18229	Canola	cytosol, mitochondrion	95.39	71.88
AT1G04400.1	Thale cress	cytosol	88.25	62.58
CDX86636	Canola	cytosol	88.48	62.04
CDY15503	Canola	cytosol	88.48	61.84
KRH13218	Soybean	extracellular	11.29	58.33
KRH69122	Soybean	cytosol	68.43	49.5
KRG92422	Soybean	cytosol	72.12	49.37
Solyc09g090100.2.1	Tomato	cytosol	70.51	48.19
KRH34384	Soybean	cytosol	70.97	47.98
PGSC0003DMT400044219	Potato	cytosol	70.97	47.6
VIT_05s0049g00960.t01	Wine grape	cytosol	70.05	47.06
GSMUA_Achr5P18570_001	Banana	cytosol	66.59	43.2
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	65.21	43.14
Os02t0625000-01	Rice	cytosol	62.67	41.78
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	62.44	41.5
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	62.21	41.35
HORVU6Hr1G058740.2	Barley	cytosol	62.44	41.31
TraesCS6B01G257600.2	Wheat	cytosol	61.52	41.08
EER88355	Sorghum	mitochondrion	61.52	40.83
Zm00001d045944_P007	Maize	cytosol	61.06	40.52
CDY54706	Canola	cytosol	58.99	35.9
CDX75131	Canola	cytosol	58.99	35.9
CDY21853	Canola	mitochondrion, plastid	27.19	20.92
CDY20139	Canola	cytosol, nucleus, plastid	26.73	20.68
CDX88137	Canola	plastid	23.73	18.13
CDX87114	Canola	golgi	21.89	18.13
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	23.5	17.74
CDY19825	Canola	plastid	24.42	17.46
CDY71236	Canola	cytosol	15.9	15.16
CDY71211	Canola	cytosol	15.44	14.86
CDX80473	Canola	plastid	23.73	12.62
CDX80119	Canola	endoplasmic reticulum	13.13	10.42

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	GO:A0A078DLQ5	EnsemblPlants:CDX89827
ProteinID:CDX89827	ProteinID:CDX89827.1	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1
InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987
GO:GO:0038023	EnsemblPlantsGene:GSBRNA2T00150282001	InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441
PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI0004EEF790	:

Description

BnaA10g02550D

Coordinates

chrLK031861:+:240950..243818

Molecular Weight (calculated)

50132.0 Da

IEP (calculated)

7.847

GRAVY (calculated)

-0.278

Length

434 amino acids

Sequence
(BLAST)

001: MATNRKTIVW FRRDLRIEDN PALAAAAREG SVFPVFIWCP EEEGQFHPGR ASRWWMKQSL AHLNQSLKSL GSHLTFIKTH STVSAILDCV RATGATKVVF
101: NHLYDPVSLV RDHNVKEKLM ERGISVQGYN GDLLYEPWEI NSENGKPFTS FAPYWKKCLD MSVESVMLPP PWRLMPLTAA AEGVWACSIE ELGLEDEAEK
201: PSNALLTRAW SPGWSNADKT LTEFIEKQLI DYAKNSKKVV GNSTSMLSPY LHFGEISVRR VFQCVRMKKI IWARDKNTEG EESADLFLRG IGQREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVGKFKA WSQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDIIGWQYI
401: SGSLPDGHEL DRLDNPAVNL HIFYYRTWFS GFRF

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.