Factsheet for VIT_05s0049g00960.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04760.t01
VIT_05s0049g00960.t01
VIT_05s0077g00940.t01
VIT_12s0059g01420.t01
VIT_19s0014g02660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	VIT_05s0049g00960.t01	AT1G04400.1	15805487
AT1G04400.1	VIT_19s0014g02660.t01	AT1G53090.1	22739826
AT1G04400.1	VIT_05s0077g00940.t01	AT2G18790.1	11089975
AT1G04400.1	VIT_12s0059g01420.t01	AT2G32950.1	11509693
AT1G04400.1	VIT_12s0059g01420.t01	AT2G32950.1	22739826
AT1G04400.1	VIT_03s0038g04760.t01	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92422	Soybean	cytosol	71.36	72.71
KRH34384	Soybean	cytosol	69.97	70.41
KRH69122	Soybean	cytosol	65.17	70.17
CDX89827	Canola	cytosol, mitochondrion	47.06	70.05
Solyc09g090100.2.1	Tomato	cytosol	68.42	69.61
PGSC0003DMT400044219	Potato	cytosol	68.42	68.32
Bra015313.1-P	Field mustard	cytosol	58.98	66.03
CDY18229	Canola	cytosol, mitochondrion	58.67	65.8
AT1G04400.1	Thale cress	cytosol	61.92	65.36
Bra030568.1-P	Field mustard	cytosol	61.46	64.14
CDX86636	Canola	cytosol	61.46	64.14
CDY15503	Canola	cytosol	60.84	63.28
GSMUA_Achr5P18570_001	Banana	cytosol	64.86	62.63
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	61.76	60.82
KRH13218	Soybean	extracellular	7.89	60.71
Os02t0625000-01	Rice	cytosol	58.82	58.37
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	58.05	57.43
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	58.05	57.43
TraesCS6B01G257600.2	Wheat	cytosol	57.43	57.08
HORVU6Hr1G058740.2	Barley	cytosol	57.74	56.86
EER88355	Sorghum	mitochondrion	56.81	56.12
Zm00001d045944_P007	Maize	cytosol	56.19	55.5
VIT_18s0001g05680.t01	Wine grape	cytosol	54.33	50.8
VIT_09s0002g05990.t01	Wine grape	mitochondrion	23.84	28.62
VIT_04s0008g02670.t01	Wine grape	plastid	21.36	23.55
VIT_07s0005g00590.t01	Wine grape	cytosol	11.76	16.74

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	EntrezGene:100247664	wikigene:100247664	MapMan:26.1.2.1.1	Gene3D:3.40.50.620
EMBL:AM444906	ProteinID:CAN71971	ProteinID:CAN71971.1	ProteinID:CBI23640	ProteinID:CBI23640.3	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_pln	UniProt:D7SZG3	InterPro:DNA_photolyase_1_CS_C
InterPro:DNA_photolyase_N	EMBL:FN595496	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023
InterPro:IPR006050	InterPro:IPR014729	EntrezGene:LOC100247664	wikigene:LOC100247664	PFAM:PF00875	PFAM:PF03441
PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGR:TC52397	TIGR:TC59327	TIGRFAMs:TIGR02766
UniParc:UPI0001BE2722	ArrayExpress:VIT_05s0049g00960	EnsemblPlantsGene:VIT_05s0049g00960	EnsemblPlants:VIT_05s0049g00960.t01	RefSeq:XP_002285169	RefSeq:XP_002285169.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:7973292..7984306

Molecular Weight (calculated)

73727.1 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.488

Length

646 amino acids

Sequence
(BLAST)

001: MSSDSRTVVW FRRDLRVDDN PALATAAKEG SVLPVFIWCP KEEGQFYPGR VSRWWLKQSL MHLKQSLRSL GADLLLIKAE STIEALLECI HAIGATKLVY
101: NHLYDPISLV RDHSIKQKLM ELGMSVQSYN GDLLYKPWDI YDDKGNAFTT FEAYWNKCLS MQMEFVSLLP PWRLVPAAGK VNNCSIEELG LEDESEKSSN
201: ALLGRGWSPG WSNADKALTE FIEQHLFDYS KKRLKVEGNS TSLLSPYLHF GELSVRKVLH SVRMKQLLWV KEGNSVWEES VDLFLRAIGL REYSRYLCFN
301: FPSTHERPLL SNLKHFPWHA HHVHFKAWRQ GRTGYPLVDA GMRELWATGW IHNRIRVIVS SFAVKFLLLP WKWGMKYFWD TLLDADLESD ILGWQYISGS
401: LPDGHELDRL DSPEIQGSNY DPEGEYVRHW LPELARVPTE WIHHPWDAPF TVLKSAGVEL GQNYPKPIIE IDLARERLTE AIFMMWEKDA ATKVANSNGT
501: NEEVVDNSDS IENLSIANVS VKEKTPCPTS SSHDQRVPTF QNSKSGLLNR KRAKCIEDEK LSQNNLHNYD HGCGTSRADE DLRSTAESSS AKKQATSRTS
601: FSVPQSCSSS SEGNPLQEYE SPGLKQPWPE QIVWEKTSSK DGTMEG

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.