Factsheet for VIT_05s0077g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0357g00110.t01
VIT_00s0556g00010.t01
VIT_01s0026g00940.t01
VIT_01s0026g02330.t01
VIT_04s0008g01070.t01	cytosol
VIT_05s0029g00330.t01
VIT_05s0049g00960.t01
VIT_05s0077g00940.t01
VIT_06s0004g02900.t01
VIT_07s0005g02510.t01	nucleus
VIT_10s0003g02680.t01
VIT_10s0003g03270.t01
VIT_10s0003g03770.t01
VIT_12s0028g02670.t01	cytosol
VIT_12s0057g00980.t01
VIT_12s0057g01480.t01	cytosol, nucleus
VIT_12s0059g01420.t01
VIT_14s0108g01500.t01
VIT_15s0048g00370.t01
VIT_16s0022g01440.t01
VIT_17s0000g05890.t01	cytosol
VIT_17s0000g09370.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18790.1	VIT_05s0049g00960.t01	AT1G04400.1	11089975
AT2G18790.1	VIT_01s0026g00940.t01	AT1G10470.1	11691995
AT2G18790.1	VIT_17s0000g05890.t01	AT1G74490.1	23964902
AT2G18790.1	VIT_17s0000g05890.t01	AT1G74490.1	23964902
AT2G18790.1	VIT_01s0026g02330.t01	AT2G02950.1	10348744
AT2G18790.1	VIT_05s0077g00940.t01	AT2G18790.1	15273290
AT2G18790.1	VIT_05s0077g00940.t01	AT2G18790.1	19286967
AT2G18790.1	VIT_04s0008g01070.t01	AT2G26190.1	23964902
AT2G18790.1	VIT_04s0008g01070.t01	AT2G26190.1	23964902
AT2G18790.1	VIT_12s0059g01420.t01	AT2G32950.1	11752373
AT2G18790.1	VIT_10s0003g03770.t01	AT2G34590.1	23964902
AT2G18790.1	VIT_12s0028g02670.t01	AT2G42400.1	22904146
AT2G18790.1	VIT_12s0028g02670.t01	AT2G42400.1	22904146
AT2G18790.1	VIT_15s0048g00370.t01	AT2G45290.1	23964902
AT2G18790.1	VIT_16s0022g01440.t01	AT2G45290.1	23964902
AT2G18790.1	VIT_07s0005g02510.t01	AT2G46970.1	23964902
AT2G18790.1	VIT_07s0005g02510.t01	AT2G46970.1	23964902
AT2G18790.1	VIT_05s0029g00330.t01	AT4G13940.1	23964902
AT2G18790.1	VIT_05s0077g00940.t01	AT4G16250.1	15273290
AT2G18790.1	VIT_05s0077g00940.t01	AT4G16250.1	19286967
AT2G18790.1	VIT_10s0003g02680.t01	AT4G18130.1	15273290
AT2G18790.1	VIT_10s0003g02680.t01	AT4G18130.1	19286967
AT2G18790.1	VIT_17s0000g09370.t01	AT4G20360.1	23964902
AT2G18790.1	VIT_14s0108g01500.t01	AT5G15450.1	23964902
AT2G18790.1	VIT_12s0057g00980.t01	AT5G35840.1	15273290
AT2G18790.1	VIT_12s0057g00980.t01	AT5G35840.1	19286967
AT2G18790.1	VIT_10s0003g03270.t01	AT5G46240.1	23964902
AT2G18790.1	VIT_12s0057g01480.t01	AT5G48300.1	23964902
AT2G18790.1	VIT_12s0057g01480.t01	AT5G48300.1	23964902
AT2G18790.1	VIT_12s0057g01480.t01	AT5G48300.1	23964902
AT2G18790.1	VIT_06s0004g02900.t01	AT5G60600.1	23964902
AT2G18790.1	VIT_00s0357g00110.t01	AT5G65090.1	23964902
AT2G18790.1	VIT_00s0556g00010.t01	AT5G65090.1	23964902
AT4G16250.1	VIT_05s0077g00940.t01	AT2G18790.1	15273290
AT4G16250.1	VIT_05s0077g00940.t01	AT2G18790.1	19286967
AT4G16250.1	VIT_05s0077g00940.t01	AT4G16250.1	15273290
AT4G16250.1	VIT_05s0077g00940.t01	AT4G16250.1	19286967
AT4G16250.1	VIT_10s0003g02680.t01	AT4G18130.1	15273290
AT4G16250.1	VIT_10s0003g02680.t01	AT4G18130.1	19286967
AT4G16250.1	VIT_12s0057g00980.t01	AT5G35840.1	19286967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061712	Potato	cytosol, plastid	86.54	86.46
Solyc01g059870.2.1	Tomato	cytosol	84.5	84.35
KRH36969	Soybean	nucleus	82.11	81.53
KRH11936	Soybean	nucleus	82.29	80.85
PGSC0003DMT400069974	Potato	mitochondrion	78.3	78.58
Solyc05g053410.2.1	Tomato	nucleus, plastid	77.77	78.32
Os03t0309200-01	Rice	nucleus, plasma membrane	76.44	77.05
AT2G18790.1	Thale cress	nucleus	78.65	75.77
Zm00001d028905_P001	Maize	extracellular	77.41	75.28
TraesCS4D01G183400.1	Wheat	plastid	77.41	75.09
Bra022192.1-P	Field mustard	cytosol	79.27	75.08
TraesCS4A01G122500.2	Wheat	plastid	77.33	74.87
TraesCS4B01G182400.1	Wheat	plastid	77.33	74.87
HORVU4Hr1G053400.1	Barley	plasma membrane	77.33	74.74
EER94971	Sorghum	plastid	77.77	74.53
GSMUA_Achr3P08340_001	Banana	nucleus	71.12	73.74
Zm00001d047632_P001	Maize	plastid	76.08	73.67
AT4G16250.1	Thale cress	plastid	75.73	73.45
Bra001650.1-P	Field mustard	cytosol	9.39	69.28
VIT_10s0003g02680.t01	Wine grape	vacuole	61.82	66.22
Zm00001d025231_P001	Maize	cytosol	8.68	61.25
Zm00001d000219_P001	Maize	cytosol	5.76	58.56
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	56.07	56.62
VIT_14s0060g00100.t01	Wine grape	nucleus	53.85	54.09
CDY42549	Canola	cytosol	9.57	47.79
Zm00001d024238_P001	Maize	cytosol	14.08	36.14

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:100261882	wikigene:100261882	MapMan:26.1.1.1	MapMan:26.4.1.2	Gene3D:3.30.450.20
Gene3D:3.30.450.270	Gene3D:3.30.450.40	Gene3D:3.30.565.10	ProteinID:ACC60966	ProteinID:ACC60966.1	ProteinID:CCB47970
ProteinID:CCB47970.1	EMBL:EU436650	UniProt:F6H723	EMBL:FN595246	InterPro:GAF	InterPro:GAF-like_dom_sf
GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009584	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009881
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0017006	GO:GO:0018298	GO:GO:0019538
GO:GO:0023014	GO:GO:0038023	GO:GO:0042803	GO:GO:0050896	InterPro:HATPase_C	InterPro:HATPase_C_sf
InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR000014	InterPro:IPR005467	InterPro:IPR016132
InterPro:IPR029016	InterPro:IPR036890	EntrezGene:LOC100261882	wikigene:LOC100261882	InterPro:PAS	InterPro:PAS-like_dom_sf
InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00512	PFAM:PF00989	PFAM:PF01590
PFAM:PF02518	PFAM:PF08446	PIRSF:PIRSF000084	PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046
PFscan:PS50109	PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF12	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment
InterPro:Phytochrome	InterPro:Phytochrome_A-E	InterPro:Phytochrome_cen-reg	SMART:SM00065	SMART:SM00091	SMART:SM00387
SMART:SM00388	SUPFAM:SSF47384	SUPFAM:SSF55781	SUPFAM:SSF55785	SUPFAM:SSF55874	TIGR:TC53980
TIGR:TC68715	TIGRFAMs:TIGR00229	UniParc:UPI00019832C9	ArrayExpress:VIT_05s0077g00940	EnsemblPlantsGene:VIT_05s0077g00940	EnsemblPlants:VIT_05s0077g00940.t01
unigene:Vvi.1429	RefSeq:XP_002278263	RefSeq:XP_002278263.1	:	:	:

Description

Phytochrome [Source:UniProtKB/TrEMBL;Acc:F6H723]

Coordinates

chr5:-:710743..718860

Molecular Weight (calculated)

125581.0 Da

IEP (calculated)

5.896

GRAVY (calculated)

-0.146

Length

1129 amino acids

Sequence
(BLAST)

0001: MSSGNRGTQS HHQAQSSGTS NLRVYHTDSM SKAIAQYTMD ARLHAVYEQS GESGKSFDYS QSVRTTTQSV PEQQITAYLS KIQRGGHIQP FGCMLAVDEA
0101: TFRVIAFSEN AREMLGLTPQ SVPSLEKPEI LLVGTDVRTL FTPSSAVLLE KAFGAREITL LNPVWIHSKN SGKPFYAILH RIDVGIVIDL EPARTEDPAL
0201: SIAGAVQSQK LAVRAISHLQ SLPGGDINLL CETVVENVRE LTGYDRVMVY KFHEDEHGEV VAESKRSDLE PYIGLHYPAT DIPQASRFLF RQNRVRMIVD
0301: CHATPVLVIQ DEGLMQPLCL VGSTLRAPHG CHAQYMANMG STASLAMAVI INGNDEEAIG GRNLMRLWGL VVCHHTSARC IPFPLRYACE FLMQAFGLQL
0401: NMELQLASQL SEKHVLRTQT LLCDMLLRDS PTGIVTQSPS IMDLVKCDGA ALYCQGKYYP TGVTPTEAQI KDIAEWLLAN HADSTGLSTD SLADAGYPGA
0501: ASLGDAVCGM AVAYITSRDF LFWFRSHTAK EIKWGGAKHH PEDKDDGQRM HPRSSFKAFL EVVKSRSLPW ENAEMDAIHS LQLILRDSFK DATDGSNSKA
0601: VMHAQLGELE LQGMDELSSV AREMVRLIET ATAPIFAVDV DGCINGWNAK VAELTGLSVE EAMGKSLVHD LVYKESEETV DKLLHHALQG EEDKNVEIKL
0701: RTFDSQQHKK AVFVVVNACS SRDYTNNIVG VCFVGQDVTG QKVVMDKFIH IQGDYKAIVH SPNPLIPPIF ASDENTVCSE WNTAMEKLTG WSRGDIIGKM
0801: LVGEIFGSSC RLKGPDALTK FMIVLHNAIG GQDTDKFPFS FFDQNGKYVQ ALLTANKRVN IEGQIIGAFC FLQIASPELQ QALKVQRQQE KKCFARMKEL
0901: AYICQEIKNP LSGIRFTNSL LEATDLTEDQ KQFLETSAAC EKQMSKIIRD VDLDSIEDGS LELERAEFLL GSVINAVVSQ VMILLRERDL QLIRDIPEEV
1001: KTLAVYGDQV RIQQVLADFL LNMVRYAPSP DGWIEIQVHP RLKQISEEVK LMHIEFRMVC PGEGLPPNLI QDMFHSSRWM TQEGLGLSMC RKILKLINGE
1101: VQYIRESERC YFLISIELPV PRRGSKSVD

Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)

0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY

Arabidopsis Description

PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.