Factsheet for VIT_17s0000g05890.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74490.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT1G74490.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G095950.2	Barley	cytosol	24.26	53.62
TraesCS4B01G325400.1	Wheat	mitochondrion, plastid	39.02	51.29
TraesCS5A01G497700.1	Wheat	mitochondrion, plastid	39.02	51.29
HORVU7Hr1G088710.2	Barley	cytosol	41.97	50.0
Bra003798.1-P	Field mustard	cytosol	55.41	42.78
CDX68181	Canola	cytosol	55.41	42.78
CDX85839	Canola	cytosol	55.41	42.78
AT1G74490.1	Thale cress	cytosol	55.74	42.61
VIT_06s0004g00220.t01	Wine grape	mitochondrion, plastid	50.49	40.53
VIT_08s0056g00150.t01	Wine grape	cytosol	53.44	37.73
VIT_02s0087g00270.t01	Wine grape	plastid	51.8	37.26
VIT_11s0016g01060.t01	Wine grape	mitochondrion, plastid	53.44	36.88
VIT_04s0008g02070.t01	Wine grape	cytosol	51.8	35.91
VIT_11s0065g00470.t01	Wine grape	cytosol	53.44	35.75
VIT_09s0002g01110.t01	Wine grape	mitochondrion	50.82	35.23
VIT_01s0026g01870.t01	Wine grape	cytosol	41.97	32.9
VIT_11s0016g01010.t01	Wine grape	cytosol	13.44	24.4
CDY50604	Canola	cytosol	18.36	22.76

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100246687	wikigene:100246687	Gene3D:3.30.200.20	MapMan:50.2.7	ProteinID:CBI15250
ProteinID:CBI15250.3	UniProt:D7SID9	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100246687	wikigene:LOC100246687	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF160	InterPro:Prot_kinase_dom	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0001BE0B73	ArrayExpress:VIT_17s0000g05890	EnsemblPlantsGene:VIT_17s0000g05890	EnsemblPlants:VIT_17s0000g05890.t01	RefSeq:XP_002268136	RefSeq:XP_002268136.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:6427646..6430467

Molecular Weight (calculated)

33439.1 Da

IEP (calculated)

9.273

GRAVY (calculated)

-0.287

Length

305 amino acids

Sequence
(BLAST)

001: MVVAVKKLIP AGFQGHKEWL AEVNFLGQLQ HPNLVKLLGY CLEGEDRLLV YEFMARGSLE NHLFRRTVPP LSWETRIKVA VGAARGLAVL HNSQPEIIYR
101: DFKASNILLD SEFNAKLSDF GLAKEGPTGD RTHVSTQVFG TQGYAAPEYI ATGHLSTRCD IYSFGVVLLE ILSGRRAIDK TKPRAEEKLV SWARPYLNDK
201: KMFYRIMDSR MEGGYPKTGA YIASTLALQC VCHAKNRPTM SEVVKILERI LAATDTAGPS QSAQQSAPSP VGRSTVGSSN PSPHPQSPAE SPSPAHSPQP
301: PQQLG

Best Arabidopsis Sequence Match ( AT1G14370.1 )
(BLAST)

001: MGNCLDSSAK VDNSNHSPHA NSASSGSKVS SKTSRSTGPS GLSTTSYSTD SSFGPLPTLR TEGEILSSPN LKAFTFNELK NATKNFRQDN LLGEGGFGCV
101: FKGWIDQTSL TASRPGSGIV VAVKQLKPEG FQGHKEWLTE VNYLGQLSHP NLVLLVGYCA EGENRLLVYE FMPKGSLENH LFRRGAQPLT WAIRMKVAVG
201: AAKGLTFLHE AKSQVIYRDF KAANILLDAD FNAKLSDFGL AKAGPTGDNT HVSTKVIGTH GYAAPEYVAT GRLTAKSDVY SFGVVLLELI SGRRAMDNSN
301: GGNEYSLVDW ATPYLGDKRK LFRIMDTKLG GQYPQKGAFT AANLALQCLN PDAKLRPKMS EVLVTLEQLE SVAKPGTKHT QMESPRFHHS SVMQKSPVRY
401: SHDRPLLHMT PGASPLPSYT QSPRVR

Arabidopsis Description

PBL2PBL2 [Source:UniProtKB/TrEMBL;Acc:A0A178WI52]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.