Factsheet for VIT_09s0002g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g02070.t01	Wine grape	cytosol	58.86	58.86
VIT_11s0016g01060.t01	Wine grape	mitochondrion, plastid	59.09	58.82
Solyc12g049360.1.1	Tomato	vacuole	55.68	58.47
PGSC0003DMT400011147	Potato	mitochondrion, plasma membrane, plastid, vacuole	54.55	56.6
Bra003875.1-P	Field mustard	mitochondrion, plastid	47.73	53.03
KRH06195	Soybean	plastid	54.09	52.77
CDX68261	Canola	mitochondrion, plastid	47.27	52.53
CDY65019	Canola	mitochondrion, plastid	47.05	52.27
VIT_06s0004g00220.t01	Wine grape	mitochondrion, plastid	45.0	52.11
KRH47613	Soybean	plastid	54.77	52.05
Solyc06g062920.2.1	Tomato	plastid	54.77	51.94
VIT_02s0087g00270.t01	Wine grape	plastid	50.0	51.89
PGSC0003DMT400012413	Potato	cytosol	54.55	51.72
VIT_17s0000g05890.t01	Wine grape	cytosol	35.23	50.82
CDY49854	Canola	nucleus	47.05	48.82
Bra008038.1-P	Field mustard	plastid	49.55	48.77
VIT_08s0056g00150.t01	Wine grape	cytosol	47.73	48.61
CDX72925	Canola	plastid	50.0	48.57
CDX82145	Canola	plastid	43.41	48.48
Bra016050.1-P	Field mustard	plastid	49.55	48.34
CDX96417	Canola	plastid	49.55	48.34
AT1G72540.1	Thale cress	plastid	48.86	47.78
VIT_11s0065g00470.t01	Wine grape	cytosol	47.73	46.05
VIT_11s0016g01010.t01	Wine grape	cytosol	15.0	39.29
VIT_01s0026g01870.t01	Wine grape	cytosol	34.09	38.56

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100265158	wikigene:100265158	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	EMBL:AM488980
ProteinID:CAN77773	ProteinID:CAN77773.1	ProteinID:CBI35860	ProteinID:CBI35860.3	UniProt:D7TZR4	EMBL:FN596494
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004675	GO:GO:0004871
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0038023	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100265158	wikigene:LOC100265158	PFAM:PF07714
PIRSF:PIRSF000654	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF123	InterPro:Prot_kinase_dom	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	UniParc:UPI0001BE4A62	ArrayExpress:VIT_09s0002g01110	EnsemblPlantsGene:VIT_09s0002g01110	EnsemblPlants:VIT_09s0002g01110.t01	RefSeq:XP_002272911
RefSeq:XP_002272911.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:845689..847480

Molecular Weight (calculated)

49282.5 Da

IEP (calculated)

9.460

GRAVY (calculated)

-0.395

Length

440 amino acids

Sequence
(BLAST)

001: MGLKKGTWKY AFPSCFRHTG SRNVALKRRS LKRLCSSRIA TDLDVFTLAE VRAITHNFSS SSFLGEGGFG PVYKGVIDEK VRPGFKAQQV AVKVLDLDGQ
101: QGHREWLAEV IFLGQLRHPH LVKLIGYCSE KEQRVLIYEY MAKGNLENQL FRRYSASLPW TTRVKIALEA AKGLAFLHEE ENPVIFRDFK ASNILLDSDY
201: TVKLSDFGLA KDGPEGDETH VTTRVMGTEG YAAPEYIMTG HLTTMSDVYS FGVVLLELLT GRRSTDKSRP SREQNLVGWA LPFLKDPQKL KRIIDPKLEG
301: MYSTEGAKRV AMLANQCLSQ KAKCRPRMSS VVKTLESLMD LADTGFMPFV YIVPAEGQKK GEAQITLRVC GKDEAEAEAE ANHNNGKEAG KKDENKEIGL
401: LKCPKGLRHT HRLSQFRSGP VYSDNKFCIT LQTGMNCTNQ

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.