Factsheet for PGSC0003DMT400011147

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, vacuole

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g049360.1.1	Tomato	vacuole	95.28	96.42
PGSC0003DMT400012413	Potato	cytosol	69.58	63.58
PGSC0003DMT400005987	Potato	plastid	58.96	60.68
PGSC0003DMT400071701	Potato	cytosol	58.73	56.72
CDX68261	Canola	mitochondrion, plastid	52.36	56.06
Bra003875.1-P	Field mustard	mitochondrion, plastid	52.12	55.81
CDY65019	Canola	mitochondrion, plastid	52.12	55.81
KRH06195	Soybean	plastid	58.73	55.21
VIT_09s0002g01110.t01	Wine grape	mitochondrion	56.6	54.55
PGSC0003DMT400007503	Potato	cytosol	48.11	54.4
KRH47613	Soybean	plastid	58.96	54.0
PGSC0003DMT400033828	Potato	cytosol	54.25	53.12
PGSC0003DMT400040626	Potato	plastid	50.24	50.59
AT1G72540.1	Thale cress	plastid	53.3	50.22
PGSC0003DMT400071214	Potato	cytosol	50.24	50.0
PGSC0003DMT400061697	Potato	cytosol, plastid	45.05	49.48
CDX72925	Canola	plastid	52.83	49.45
CDX96417	Canola	plastid	52.59	49.45
Bra008038.1-P	Field mustard	plastid	51.89	49.22
Bra016050.1-P	Field mustard	plastid	52.12	49.0
CDY49854	Canola	nucleus	48.82	48.82
CDX82145	Canola	plastid	43.63	46.95
PGSC0003DMT400035255	Potato	cytosol	48.35	46.38

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102586111	MapMan:18.4.1.37.1	MapMan:26.8.2.2.3	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0ZZ42	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400004363
PGSC:PGSC0003DMG400004363	EnsemblPlants:PGSC0003DMT400011147	PIRSF:PIRSF000615	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001
PANTHER:PTHR27001:SF123	InterPro:Prot_kinase_dom	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000294B1AE
RefSeq:XP_006361336.1	SEG:seg	:	:	:	:

Description

Auxin-regulated dual specificity cytosolic kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400004363]

Coordinates

chr12:+:52731188..52734072

Molecular Weight (calculated)

47608.2 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.411

Length

424 amino acids

Sequence
(BLAST)

001: MAIKILLKGL LPNCFNVKIN DAIIHPHHDK INGNSRLGVG DISDPESPSN CMSDLSSNAI IGSNLHVFTY AQLKVITSNF SSYNFLGEGG FGPVHKGFID
101: DKIKYGLDAQ PVAVKLLDLE GDQGHIEWLT EVVLLGQLRH PNLVKLIGYC WEDKQRLLVY EYMARGNLEN QLFRRCSSSL PWLTRMKIAR DAAKGLAFLH
201: GEKKPVIYRD FKASNILLDS DYTAKLSDFG LAKDGPEGSD THVTTRVMGT YGYAAPEYMM TGYLTTRSDV YSYGVVLLEL LTGRQAIDKK RASREQNLVE
301: WAKPFLRDSH KLERIMDPRL EGEYSSQGAK KVATLAYQCL SHQPKSRPTM SNVVKILEPI LDLKDIPIGS FVYVVPSFDS KSGLKTKGNE EKENKENKMH
401: IISDKDHDKE SAREKNQQKS ATHI

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.