Factsheet for PGSC0003DMT400033828

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g061250.2.1	Tomato	cytosol	97.46	96.57
KRH05309	Soybean	plastid	57.51	64.51
KRH52268	Soybean	plastid	55.43	64.17
KRH15727	Soybean	cytosol, mitochondrion, plastid	56.81	63.24
KRH61599	Soybean	plasma membrane	55.43	63.16
VIT_04s0008g02070.t01	Wine grape	cytosol	60.28	59.32
PGSC0003DMT400005987	Potato	plastid	54.73	57.52
Bra034302.1-P	Field mustard	plastid	54.73	55.9
AT2G26290.1	Thale cress	mitochondrion	54.27	55.42
PGSC0003DMT400071701	Potato	cytosol	55.89	55.13
CDX77041	Canola	endoplasmic reticulum, plasma membrane	30.25	55.04
PGSC0003DMT400011147	Potato	mitochondrion, plasma membrane, plastid, vacuole	53.12	54.25
CDY48175	Canola	plastid	23.79	52.82
PGSC0003DMT400012413	Potato	cytosol	55.66	51.94
PGSC0003DMT400007503	Potato	cytosol	43.19	49.87
PGSC0003DMT400061697	Potato	cytosol, plastid	44.34	49.74
PGSC0003DMT400071214	Potato	cytosol	48.73	49.53
PGSC0003DMT400040626	Potato	plastid	47.34	48.69
PGSC0003DMT400035255	Potato	cytosol	45.27	44.34

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102593595	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1AZR8	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400012997	PGSC:PGSC0003DMG400012997
EnsemblPlants:PGSC0003DMT400033828	PIRSF:PIRSF000615	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF15
InterPro:Prot_kinase_dom	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002959A31	RefSeq:XP_006353843.1	SEG:seg

Description

Protein kinase APK1A, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400012997]

Coordinates

chr8:-:32573693..32576019

Molecular Weight (calculated)

49255.5 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.499

Length

433 amino acids

Sequence
(BLAST)

001: MTGEKLSWKS MIPCCYKVDD EFVRSKKQVK KQTSFQRLTL LDFDDPSSPL SADELSNSFI GSSLINFTFT DLREVTHHFS SANFLGEGGF GPVYKGFVDD
101: KVRPGLKAQI VAVKVLDTEG LQGHKEWLTE IIFLGQLRHP HLVKLIGYCW EDDNRLLVYE FLPRGSLENQ IFGKFSITLS WSTRMKIALG AAKGLAFLHE
201: GDKPVIYRDF KASNILIDSD YTAKLSDFGL AKDGPEGDDT HVSTRIMGTH GYAAPEYIMT GHLTTMSDVY SFGVVLLELL TGKRSLDKSR REGEHNLVEW
301: LRPYLRDPKR VARVMDRRLE DEYPMKGAQT AALVAYKCLN HYPKPRPTMD DVVKILETLQ DENNNNIDTS ISDPMITMTL SSDFSSGSEQ NEDAAAPERN
401: RNNERNQGYG WRHRLNRQRM VASYSDTALY RRH

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.