Factsheet for PGSC0003DMT400012413

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g062920.2.1	Tomato	plastid	96.98	96.98
PGSC0003DMT400011147	Potato	mitochondrion, plasma membrane, plastid, vacuole	63.58	69.58
PGSC0003DMT400005987	Potato	plastid	54.74	61.65
PGSC0003DMT400071701	Potato	cytosol	55.6	58.77
KRH06195	Soybean	plastid	56.68	58.31
KRH47613	Soybean	plastid	57.76	57.88
CDY65019	Canola	mitochondrion, plastid	48.71	57.07
CDX68261	Canola	mitochondrion, plastid	48.49	56.82
Bra003875.1-P	Field mustard	mitochondrion, plastid	48.28	56.57
PGSC0003DMT400033828	Potato	cytosol	51.94	55.66
VIT_09s0002g01110.t01	Wine grape	mitochondrion	51.72	54.55
AT1G72540.1	Thale cress	plastid	52.16	53.78
Bra008038.1-P	Field mustard	plastid	50.86	52.8
CDX72925	Canola	plastid	51.51	52.76
CDX96417	Canola	plastid	50.86	52.33
Bra016050.1-P	Field mustard	plastid	50.65	52.11
PGSC0003DMT400007503	Potato	cytosol	41.81	51.73
CDY49854	Canola	nucleus	46.98	51.42
PGSC0003DMT400040626	Potato	plastid	45.91	50.59
PGSC0003DMT400061697	Potato	cytosol, plastid	42.03	50.52
CDX82145	Canola	plastid	42.46	50.0
PGSC0003DMT400071214	Potato	cytosol	44.61	48.59
PGSC0003DMT400035255	Potato	cytosol	43.75	45.93

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102595032	MapMan:18.4.1.37.1	MapMan:26.8.2.2.3	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1A182	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400004860
PGSC:PGSC0003DMG400004860	EnsemblPlants:PGSC0003DMT400012413	PIRSF:PIRSF000615	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001
PANTHER:PTHR27001:SF123	InterPro:Prot_kinase_dom	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002964209
RefSeq:XP_006357404.1	:	:	:	:	:

Description

Auxin-regulated dual specificity cytosolic kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400004860]

Coordinates

chr6:-:48515588..48517771

Molecular Weight (calculated)

52331.7 Da

IEP (calculated)

8.534

GRAVY (calculated)

-0.511

Length

464 amino acids

Sequence
(BLAST)

001: MVTCGIDWKS VLPNCFKGNN VRSEAKVMEN SKQMNSDHHR LAFSDISTDS RSVLISLDDL SSNAVIGSNL HVFTYEELKL ITSDFSPANF LGKGGFGPVH
101: KGFIDDKIKP GLDAQPVAVK LLDLDGNQGH QEWLTEVVFL GQLRHHHLVK LIGYCWEEEQ RLLVYEYMAR GNLEDQLFSR YSSCLPWLTR IKIMVGAAKG
201: LAFLHGEEKP VIYRDFKASN ILLDSDYRAK LSDFGLAKDG PEGDDTHVST RVMGTHGYAA PEYIMTGHLT SKSDVYSFGV VLLELITGRQ AMDKKRPLKE
301: RILVDWARPM LRDPHKLDRI MDPRLEGQYS TQGAKKVAAL AYQCLSHQPR SRPTMSNIVK ILEPVLDMKD IPMGPFVYVV PSSKPDKGTE IGELKSKVDD
401: ENKANVREKE VGNAGENRED GNAKQRRAGH RHKHRLKTDA SVYSDTHLYQ KTVRHERTNK LNSC

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.