Factsheet for PGSC0003DMT400061697

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g028830.2.1	Tomato	plastid	98.19	98.19
VIT_06s0004g00220.t01	Wine grape	mitochondrion, plastid	82.9	84.21
KRH43007	Soybean	cytosol	80.57	81.63
GSMUA_Achr8P26730_001	Banana	cytosol	69.95	81.57
GSMUA_Achr1P26800_001	Banana	mitochondrion	69.17	81.16
GSMUA_Achr6P22050_001	Banana	plastid	72.54	79.77
KRH59124	Soybean	cytosol, mitochondrion	78.5	79.32
Bra002815.1-P	Field mustard	endoplasmic reticulum, plasma membrane	48.19	76.54
Os03t0159100-01	Rice	plasma membrane	73.32	75.27
GSMUA_Achr3P14980_001	Banana	cytosol	24.09	75.0
EER95470	Sorghum	plastid	72.8	74.54
AT5G56460.1	Thale cress	cytosol	77.46	73.28
CDY41811	Canola	cytosol	78.24	72.77
CDY20721	Canola	cytosol	77.98	72.53
Zm00001d027734_P004	Maize	cytosol, plastid	72.28	72.09
Bra035622.1-P	Field mustard	cytosol	76.17	72.06
TraesCS1A01G138100.1	Wheat	plastid	67.88	71.78
TraesCS4D01G273600.1	Wheat	plastid	72.28	71.54
TraesCS4B01G275000.1	Wheat	plastid	72.28	71.54
CDY32778	Canola	cytosol	77.72	71.26
CDY47750	Canola	cytosol	77.46	71.19
TraesCS1D01G134500.1	Wheat	plastid	66.84	70.68
HORVU4Hr1G073020.2	Barley	plastid	70.98	69.9
Os10t0431900-01	Rice	plasma membrane	68.13	69.21
Zm00001d032902_P001	Maize	plastid	66.84	67.36
GSMUA_Achr3P15000_001	Banana	cytosol	40.41	66.38
GSMUA_Achr7P27200_001	Banana	cytosol, plastid	68.13	66.25
EER91583	Sorghum	plastid	65.54	66.06
TraesCS4A01G031000.1	Wheat	plastid	72.02	61.78
PGSC0003DMT400007503	Potato	cytosol	52.07	53.6
PGSC0003DMT400005987	Potato	plastid	56.22	52.67
PGSC0003DMT400071214	Potato	cytosol	57.25	51.88
PGSC0003DMT400071701	Potato	cytosol	54.15	47.61
PGSC0003DMT400035255	Potato	cytosol	54.15	47.29
PGSC0003DMT400040626	Potato	plastid	50.0	45.84
PGSC0003DMT400011147	Potato	mitochondrion, plasma membrane, plastid, vacuole	49.48	45.05
PGSC0003DMT400033828	Potato	cytosol	49.74	44.34
PGSC0003DMT400012413	Potato	cytosol	50.52	42.03
TraesCS1B01G149900.1	Wheat	cytosol	25.13	40.08

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102582682	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1C7V4	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400024010
PGSC:PGSC0003DMG400024010	EnsemblPlants:PGSC0003DMT400061697	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF76	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	UniParc:UPI00029569D8	RefSeq:XP_006359196.1	SEG:seg	:	:

Description

Protein kinase APK1B, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400024010]

Coordinates

chr1:-:18746534..18754170

Molecular Weight (calculated)

43370.2 Da

IEP (calculated)

8.120

GRAVY (calculated)

-0.370

Length

386 amino acids

Sequence
(BLAST)

001: MGNCCCWGQP SIYRVSSNAK SESPKDESPS KKARMDHTKM PSNPEEVEDL RRSSATNPLI AFSFDELKII TSNFRQDYML GGGGFGNVYK GYITEDLREG
101: FQPITVAVKV HDGDNSYQGH REWLAEVIFL GQLSHPNLVK LIGYCCEAEH RVLIYEYMAR GSVENNLFSR VLLPLPWSIR MKIAFGAAKG LAFLHEAEKP
201: VIYRDFKTSN ILLDLEYNTK LSDFGLAKDG PVGDKSHVST RIMGTYGYAA PEYIMTGHLT PRSDVYSFGV VLLELLTGRR SLDKSKPARE QNLTDWAVPL
301: LREKKKLLNI IDPRLDGDYP IKSVHKAAML AYHCLNRNPK ARPLMRDIVD SLEPLQIPGE VPTSEKPTLT VITDTPNGVM KEKVQT

Best Arabidopsis Sequence Match ( AT5G56460.1 )
(BLAST)

001: MGNCWCRFEP LNHRVSANAK SESPKEQSPT VEDKHIKEVQ KLPSNPKEVE DLRRDSAANP LIAFTYEELK NITSNFRQDR VLGGGGFGSV YKGFIKEDLG
101: DQEVPEPLPV AVKVHDGDNS FQGHREWLAE VIFLGQLSHP NLVKLIGYCC EDNHRVLIYE YMARGSVENN LFSRVLLPLS WAIRMKIAFG AAKGLAFLHE
201: AKKPVIYRDF KTSNILLDMD YNAKLSDFGL AKDGPVGDKS HVSTRIMGTY GYAAPEYIMT GHLTPGSDVY SFGVVLLELL TGRKSLDKSR PTREQNLIDW
301: ALPLLKEKKK VLNIVDPKMN CEYPVKAVQK AAMLAYHCLN RNPKARPLMR DIVDSLEPLQ ATEEEALLVP PVQKAVITII DEMPKNGLKK VEELKKVEEV
401: KKVIEDAC

Arabidopsis Description

PBL16Probable serine/threonine-protein kinase PBL16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.