Factsheet for PGSC0003DMT400007503

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009310.1.1	Tomato	cytosol	98.13	98.13
KRH60107	Soybean	cytosol	69.87	69.13
KRH41391	Soybean	cytosol	69.33	68.6
PGSC0003DMT400035255	Potato	cytosol	80.8	68.55
GSMUA_Achr10P...	Banana	cytosol	56.0	62.69
GSMUA_Achr7P19720_001	Banana	cytosol	56.0	61.22
VIT_11s0065g00470.t01	Wine grape	cytosol	71.2	58.55
CDX86877	Canola	plastid	65.87	56.78
CDY66556	Canola	plastid	66.4	56.59
AT2G07180.1	Thale cress	cytosol	65.87	55.88
CDY41127	Canola	cytosol	65.6	55.28
CDX94273	Canola	cytosol	65.6	55.28
Bra037903.1-P	Field mustard	plastid	66.13	54.39
Bra033198.1-P	Field mustard	cytosol	64.53	54.38
KXG20794	Sorghum	plastid	54.13	53.14
GSMUA_Achr4P09620_001	Banana	cytosol	59.47	52.59
PGSC0003DMT400061697	Potato	cytosol, plastid	53.6	52.07
TraesCS7A01G416100.1	Wheat	mitochondrion	52.27	51.31
CDY68998	Canola	cytosol	32.0	51.28
KXG20556	Sorghum	cytosol	63.47	51.07
TraesCS7B01G316100.1	Wheat	cytosol	52.53	51.04
Zm00001d046939_P001	Maize	cytosol	63.2	50.75
Os06t0663200-01	Rice	cytosol, plasma membrane	63.47	50.75
TraesCS7D01G409400.1	Wheat	cytosol	51.47	50.52
PGSC0003DMT400005987	Potato	plastid	55.2	50.24
PGSC0003DMT400071214	Potato	cytosol	57.07	50.23
TraesCS7D01G474600.1	Wheat	cytosol	62.93	49.48
TraesCS7B01G391200.1	Wheat	cytosol	62.93	49.48
Os06t0703000-01	Rice	plasma membrane	52.8	49.25
GSMUA_Achr7P04920_001	Banana	cytosol	58.67	49.11
TraesCS7A01G487900.1	Wheat	cytosol	62.67	49.06
PGSC0003DMT400011147	Potato	mitochondrion, plasma membrane, plastid, vacuole	54.4	48.11
HORVU7Hr1G096400.1	Barley	peroxisome, plastid	46.67	47.95
PGSC0003DMT400040626	Potato	plastid	53.07	47.27
Zm00001d036656_P003	Maize	cytosol	59.73	45.62
HORVU7Hr1G109590.5	Barley	plasma membrane	62.93	45.47
PGSC0003DMT400071701	Potato	cytosol	53.07	45.33
PGSC0003DMT400033828	Potato	cytosol	49.87	43.19
PGSC0003DMT400012413	Potato	cytosol	51.73	41.81
Zm00001d036459_P005	Maize	mitochondrion, plastid	41.87	39.75
Zm00001d014697_P002	Maize	mitochondrion	41.6	38.24
GSMUA_Achr3P27770_001	Banana	cytosol	58.13	26.42

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102603933	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0ZT37	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400002894
PGSC:PGSC0003DMG400002894	EnsemblPlants:PGSC0003DMT400007503	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF190	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002964A7F	RefSeq:XP_006345242.1	:	:	:

Description

Protein kinase APK1B, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400002894]

Coordinates

chr12:+:3072324..3078021

Molecular Weight (calculated)

42246.1 Da

IEP (calculated)

8.962

GRAVY (calculated)

-0.427

Length

375 amino acids

Sequence
(BLAST)

001: MGSCQSIEEG KTGQRPESKS VVHGVGSYPN KRNPASQPKL KTPEGHDSRR RSSIVVIPET VEDLQQNPGI SDLDIFKYEE MKMATKHFRP KQVLGEGGFG
101: IVYKGVIDEH VRPGYKTTYV AIKELDPEGL QGDREWLAEM NYLGQLRHPN LVKLIGYCCE DHHRLLVYEY MESGSLEKHL FPRMCATLTW SRRMKVALDA
201: AKGLAFLHGA EMPVIYRDFK TSNILLDADF NAKLSDFGLA KDGPMGDQTH VSTRVMGTYG YAAPEYVMTG HLTARSDVYA YGVVLLEMLI GRRAIDKTRP
301: SQEYNLVEWA RPLLNHNKKL FKILDPRLKG QYSSKTVVKV ASLAYQCLSQ NPKGRPVMSQ VVEILEALQV PQVKD

Best Arabidopsis Sequence Match ( AT2G07180.2 )
(BLAST)

001: MGICFSAEDQ HYQFSQQQNY PKKTTPGKKA AVYLMKSDCE DVVGKVSGSG SGGGGLPLAP KNIKDLQSNP GYENVDIFTY EEMKIATKQF RPDYILGEGG
101: FGVVYKGVID ESVRVGFKST KVAIKELNPE GFQGDREWLA EVNYLGQLSH PNLVKLIGYC CEDDHRLLVY EYMAMGSLEK HLFRRVGCTL TWTKRMKIAL
201: DAAKGLAFLH GAERSIIYRD LKTANILLDE GYNAKLSDFG LAKDGPRGDQ THVSTRVMGT YGYAAPEYVM TGHLTSRSDV YGFGVLLLEM LLGKRAMDKS
301: RACREHNLVE WARPLLNHNK KLLRIIDPRM DGQYGTKALM KVAGLAYQCL SQNPKGRPLM NHVVEVLETL KDDGDAQEEV MTNLHSRGKS VTLYEASSDS
401: QGTRDGNGQR RRRPESGRSK SEAAVDTEKY VSTLSEPDTT KI

Arabidopsis Description

PBL17Probable serine/threonine-protein kinase PBL17 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.