Factsheet for Solyc01g028830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061697	Potato	cytosol, plastid	98.19	98.19
VIT_06s0004g00220.t01	Wine grape	mitochondrion, plastid	83.16	84.47
KRH43007	Soybean	cytosol	80.83	81.89
GSMUA_Achr8P26730_001	Banana	cytosol	70.21	81.87
GSMUA_Achr1P26800_001	Banana	mitochondrion	69.17	81.16
GSMUA_Achr6P22050_001	Banana	plastid	72.54	79.77
KRH59124	Soybean	cytosol, mitochondrion	78.76	79.58
Bra002815.1-P	Field mustard	endoplasmic reticulum, plasma membrane	48.19	76.54
GSMUA_Achr3P14980_001	Banana	cytosol	24.35	75.81
Os03t0159100-01	Rice	plasma membrane	73.58	75.53
EER95470	Sorghum	plastid	73.06	74.8
AT5G56460.1	Thale cress	cytosol	77.46	73.28
CDY41811	Canola	cytosol	78.24	72.77
CDY20721	Canola	cytosol	77.98	72.53
Zm00001d027734_P004	Maize	cytosol, plastid	72.54	72.35
Bra035622.1-P	Field mustard	cytosol	76.17	72.06
TraesCS1A01G138100.1	Wheat	plastid	68.13	72.05
TraesCS4D01G273600.1	Wheat	plastid	72.54	71.79
TraesCS4B01G275000.1	Wheat	plastid	72.54	71.79
CDY32778	Canola	cytosol	77.98	71.5
CDY47750	Canola	cytosol	77.72	71.43
TraesCS1D01G134500.1	Wheat	plastid	67.1	70.96
HORVU4Hr1G073020.2	Barley	plastid	71.24	70.15
Os10t0431900-01	Rice	plasma membrane	68.13	69.21
Zm00001d032902_P001	Maize	plastid	66.84	67.36
GSMUA_Achr7P27200_001	Banana	cytosol, plastid	68.65	66.75
GSMUA_Achr3P15000_001	Banana	cytosol	40.41	66.38
EER91583	Sorghum	plastid	65.54	66.06
TraesCS4A01G031000.1	Wheat	plastid	72.28	62.0
Solyc12g009310.1.1	Tomato	cytosol	52.07	53.6
Solyc05g025820.2.1	Tomato	cytosol	55.96	52.94
Solyc10g074710.1.1	Tomato	plastid	56.99	51.64
Solyc07g041940.2.1	Tomato	cytosol, plastid	53.89	47.93
Solyc07g042590.2.1	Tomato	cytosol	53.63	46.83
Solyc08g074980.2.1	Tomato	plastid	50.52	46.21
Solyc12g049360.1.1	Tomato	vacuole	49.22	45.35
Solyc08g061250.2.1	Tomato	cytosol	51.04	45.08
Solyc06g062920.2.1	Tomato	plastid	50.78	42.24
TraesCS1B01G149900.1	Wheat	cytosol	25.13	40.08

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
UniProt:K4AV64	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF76	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc01g028830.2	EnsemblPlants:Solyc01g028830.2.1	UniParc:UPI0002762F52	SEG:seg

Description

No Description!

Coordinates

chr1:+:41232211..41236033

Molecular Weight (calculated)

43289.2 Da

IEP (calculated)

8.260

GRAVY (calculated)

-0.360

Length

386 amino acids

Sequence
(BLAST)

001: MGNCCCRGQP SIYRVSSNAK SESPKDKSPS QNARMDHTKM PSNPEEVEDL RRSSATNPLI AFSFDELKII TCNFRQDYML GGGGFGNVYK GYITEDLREG
101: LQPITVAVKV HDGDNSYQGH REWLAEVIFL GQLSHPNLVK LIGYCCEAEH RVLIYEYMAR GSVENNLFSR VLLPLPWSIR MKIAFGAAKG LAFLHEAEKP
201: VIYRDFKTSN ILLDLEYNTK LSDFGLAKDG PVGDKSHVST RIMGTYGYAA PEYIMTGHLT PRSDVYSFGV VLLELLTGRR SLDKSKPARE QNLTDWAVPL
301: LREKKKLLNI IDPRLDGDYP IKSVHKAAML AYHCLNRNPK ARPLMRDIVD SLEPLQIPGE VPTSEKPTLT VITDTPNGVI KEKVQT

Best Arabidopsis Sequence Match ( AT5G56460.1 )
(BLAST)

001: MGNCWCRFEP LNHRVSANAK SESPKEQSPT VEDKHIKEVQ KLPSNPKEVE DLRRDSAANP LIAFTYEELK NITSNFRQDR VLGGGGFGSV YKGFIKEDLG
101: DQEVPEPLPV AVKVHDGDNS FQGHREWLAE VIFLGQLSHP NLVKLIGYCC EDNHRVLIYE YMARGSVENN LFSRVLLPLS WAIRMKIAFG AAKGLAFLHE
201: AKKPVIYRDF KTSNILLDMD YNAKLSDFGL AKDGPVGDKS HVSTRIMGTY GYAAPEYIMT GHLTPGSDVY SFGVVLLELL TGRKSLDKSR PTREQNLIDW
301: ALPLLKEKKK VLNIVDPKMN CEYPVKAVQK AAMLAYHCLN RNPKARPLMR DIVDSLEPLQ ATEEEALLVP PVQKAVITII DEMPKNGLKK VEELKKVEEV
401: KKVIEDAC

Arabidopsis Description

PBL16Probable serine/threonine-protein kinase PBL16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.