Factsheet for Solyc06g062920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012413	Potato	cytosol	96.98	96.98
Solyc12g049360.1.1	Tomato	vacuole	62.93	69.69
Solyc05g025820.2.1	Tomato	cytosol	54.96	62.5
Solyc07g041940.2.1	Tomato	cytosol, plastid	55.17	58.99
KRH06195	Soybean	plastid	57.11	58.76
KRH47613	Soybean	plastid	58.19	58.32
CDY65019	Canola	mitochondrion, plastid	48.71	57.07
CDX68261	Canola	mitochondrion, plastid	48.49	56.82
Bra003875.1-P	Field mustard	mitochondrion, plastid	48.28	56.57
Solyc08g061250.2.1	Tomato	cytosol	52.37	55.61
VIT_09s0002g01110.t01	Wine grape	mitochondrion	51.94	54.77
AT1G72540.1	Thale cress	plastid	51.72	53.33
CDX72925	Canola	plastid	51.29	52.54
Bra008038.1-P	Field mustard	plastid	50.43	52.35
CDX96417	Canola	plastid	50.43	51.88
Solyc12g009310.1.1	Tomato	cytosol	41.81	51.73
Bra016050.1-P	Field mustard	plastid	50.22	51.66
Solyc08g074980.2.1	Tomato	plastid	46.34	50.95
CDY49854	Canola	nucleus	46.55	50.94
Solyc01g028830.2.1	Tomato	plastid	42.24	50.78
CDX82145	Canola	plastid	42.03	49.49
Solyc10g074710.1.1	Tomato	plastid	44.83	48.83
Solyc07g042590.2.1	Tomato	cytosol	43.53	45.7

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	MapMan:26.8.2.2.3	Gene3D:3.30.200.20	EMBL:AF332960	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
GO:GO:0038023	EMBL:GU184126	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000615
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF123	InterPro:Prot_kinase_dom	UniProt:Q94FU1
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc06g062920.2	EnsemblPlants:Solyc06g062920.2.1	UniParc:UPI00000A2472

Description

Auxin-regulated dual specificity cytosolic kinase [Source:UniProtKB/TrEMBL;Acc:Q94FU1]

Coordinates

chr6:+:39716883..39719077

Molecular Weight (calculated)

52425.7 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.512

Length

464 amino acids

Sequence
(BLAST)

001: MATCGIDWKS VLPNCFKGNN VRSEAKVMEN SKQMNSDHHR LAFSDISTDS RSVLISLDDL SSNAVIGSNL HVFTYEELKL ITSDFSSANF LGKGGFGPVH
101: KGFIDDKIKP GLDAQPVAVK LLDLDGNQGH QEWLTEVVFL GQLRHHHLVK LIGYCWEEEQ RLLVYEYMAR GNLEDQLFSR YSSCLPWLTR IKIMVGAAKG
201: LAFLHGEEKP VIYRDFKASN ILLDSDYRAK LSDFGLAKDG PEGDDTHVST RVMGTHGYAA PEYIMTGHLT SKSDVYSFGV VLLELITGRR AMDKKRPLKE
301: RILVDWARPM LRDPHKLDRI MDPRLEGQYS TQGAKKVAAL AYQCLSHHPR SRPTMSNIVK ILEPVLDMKD IPMGPFVYVV PSSKPDKGTE IGELKTKVND
401: ENKAGVRENE VDNAGENRED GNAKQRRVGH RYKHRLKTDA SVYSDTHLYH KTVKHERTNK LNSY

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.