Factsheet for VIT_04s0008g02070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52268	Soybean	plastid	63.64	74.87
KRH61599	Soybean	plasma membrane	62.95	72.89
KRH05309	Soybean	plastid	62.95	71.76
KRH15727	Soybean	cytosol, mitochondrion, plastid	62.05	70.18
VIT_11s0016g01060.t01	Wine grape	mitochondrion, plastid	64.32	64.03
Bra034302.1-P	Field mustard	plastid	58.64	60.85
Solyc08g061250.2.1	Tomato	cytosol	60.23	60.64
CDX77041	Canola	endoplasmic reticulum, plasma membrane	32.73	60.5
AT2G26290.1	Thale cress	mitochondrion	58.18	60.38
PGSC0003DMT400033828	Potato	cytosol	59.32	60.28
VIT_09s0002g01110.t01	Wine grape	mitochondrion	58.86	58.86
CDY48175	Canola	plastid	25.0	56.41
VIT_06s0004g00220.t01	Wine grape	mitochondrion, plastid	48.18	55.79
VIT_02s0087g00270.t01	Wine grape	plastid	50.23	52.12
VIT_17s0000g05890.t01	Wine grape	cytosol	35.91	51.8
VIT_08s0056g00150.t01	Wine grape	cytosol	50.45	51.39
VIT_11s0065g00470.t01	Wine grape	cytosol	48.18	46.49
VIT_11s0016g01010.t01	Wine grape	cytosol	16.59	43.45
VIT_01s0026g01870.t01	Wine grape	cytosol	35.91	40.62

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100262822	wikigene:100262822	MapMan:18.4.1.37.1	MapMan:26.8.2.2.3	Gene3D:3.30.200.20
ProteinID:CCB46618	ProteinID:CCB46618.1	UniProt:F6H2T3	EMBL:FN595231	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	EntrezGene:LOC100262822	wikigene:LOC100262822	PFAM:PF07714	PIRSF:PIRSF000615	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF15	InterPro:Prot_kinase_dom	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	UniParc:UPI00015C8F5A	ArrayExpress:VIT_04s0008g02070	EnsemblPlantsGene:VIT_04s0008g02070	EnsemblPlants:VIT_04s0008g02070.t01	RefSeq:XP_002280196
RefSeq:XP_002280196.1	RefSeq:XP_010648397.1	:	:	:	:

Description

No Description!

Coordinates

chr4:+:1691099..1693262

Molecular Weight (calculated)

49677.7 Da

IEP (calculated)

7.710

GRAVY (calculated)

-0.392

Length

440 amino acids

Sequence
(BLAST)

001: MTLKITWKTI MPGCYKTETP IAESRKKPVL KQGSFQRLSL SDLSNPGSPL SVDDISNSLI GSNLYTFTLA ELREITHNFS PSNLLGEGGF GPVYKGFIDE
101: KLRPKLKAQP VAVKLLDLDG LQGHREWLAE IIFLGQLRHP HLVKLIGYCC EDEHRLLIYE YMARGSLENQ LFRRYSAALP WSARMKILFG AAKGLAFLHE
201: GDKPVIYRDF KASNILLDPD YTAKLSDFGL AKDGPEGDET HVSTRIMGTH GYAAPEYIMT GHLTTMSDVY SFGVVLLEVI SGKRSMDKTR PSREQNLVEW
301: ARPMLKDPRK LDRVIDSRLE GLFSTKGAQK AAELAYKCLS HQAKARPAMS DVVKILEPLQ DFDDTVISPF VYVVPAEGEV GDESESEKDI SHQEIKERDD
401: GQQNRPAWRH RIKLPLSLVA YSESALYKKF RHELNTQTYQ

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.