Factsheet for VIT_11s0016g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

nucleus 1
plastid 4
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g025820.2.1	Tomato	cytosol	69.91	75.74
PGSC0003DMT400005987	Potato	plastid	70.36	75.49
KRH19325	Soybean	nucleus	73.76	72.28
Solyc07g041940.2.1	Tomato	cytosol, plastid	70.81	72.12
PGSC0003DMT400071701	Potato	cytosol	71.04	71.53
KRH02603	Soybean	nucleus	73.3	71.05
KRH12542	Soybean	cytosol	73.3	70.74
KRH37497	Soybean	plastid	73.3	69.98
AT2G05940.1	Thale cress	cytosol	73.08	69.91
CDY33401	Canola	cytosol	71.95	69.58
Bra015174.1-P	Field mustard	cytosol	71.72	69.37
CDY65349	Canola	cytosol	71.49	69.15
CDX74646	Canola	endoplasmic reticulum, plasma membrane	69.23	68.0
Bra035394.1-P	Field mustard	endoplasmic reticulum, plasma membrane	69.23	68.0
CDY72324	Canola	cytosol, plasma membrane	48.87	67.71
VIT_04s0008g02070.t01	Wine grape	cytosol	64.03	64.32
VIT_09s0002g01110.t01	Wine grape	mitochondrion	58.82	59.09
VIT_11s0016g01010.t01	Wine grape	cytosol	22.4	58.93
VIT_02s0087g00270.t01	Wine grape	plastid	55.43	57.78
AT5G35580.2	Thale cress	cytosol	65.38	57.11
VIT_06s0004g00220.t01	Wine grape	mitochondrion, plastid	47.96	55.79
VIT_08s0056g00150.t01	Wine grape	cytosol	54.07	55.32
VIT_17s0000g05890.t01	Wine grape	cytosol	36.88	53.44
VIT_11s0065g00470.t01	Wine grape	cytosol	49.32	47.81
VIT_01s0026g01870.t01	Wine grape	cytosol	35.97	40.87

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100257697	wikigene:100257697	MapMan:18.4.1.37.1	MapMan:26.8.2.2.3	Gene3D:3.30.200.20
ProteinID:CBI27806	ProteinID:CBI27806.3	UniProt:D7TCE8	EMBL:FN595756	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	EntrezGene:LOC100257697	wikigene:LOC100257697	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF123	InterPro:Prot_kinase_dom	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	UniParc:UPI00015C9201	ArrayExpress:VIT_11s0016g01060	EnsemblPlantsGene:VIT_11s0016g01060	EnsemblPlants:VIT_11s0016g01060.t01	RefSeq:XP_002277991
RefSeq:XP_002277991.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:867745..869864

Molecular Weight (calculated)

49500.2 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.529

Length

442 amino acids

Sequence
(BLAST)

001: MAVKKITWRS VFPACYGSEK MASKRRKAAV VAKQTSFQRI SISDLSNPGS TLSEDLSTSL MGSNLHVFTL TELKVICQNF SSNNFIGEGG FGPVHKGFID
101: DKLRPGLKAQ PVAVKLLDLE GLQGHREWLT EVIFLGQLRH PHLVKLIGYC CEDEHRLLVY EYMPRGSLEN QLFRRYSVSL PWSTRMKIAL GAAKGLAFLH
201: EAEKPVIYRD FKASNILLDS DHTPKLSDFG LAKDGPEGDD THVSTRVMGT QGYAAPEYIM TGHLTAMSDV YSFGVVLLEL LTGRRSVDKT RPNREQNLAE
301: WARPQLNDSR KLARIMDPRL EGQYSEAGAQ SAAALAYQCL SHRPKHRPTM STVVKTLEPL QDYNEIPVGT FVYTVPSEND LPKEETKEGG EAQKEPKKES
401: SHQGHRHRMR SPKSPTIYSE TALRQNLRNS PNSPLHPRSR GS

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.