CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02603	Soybean	nucleus	97.56	96.49
KRH12542	Soybean	cytosol	80.93	79.69
KRH37497	Soybean	plastid	80.71	78.62
VIT_11s0016g01060.t01	Wine grape	mitochondrion, plastid	72.28	73.76
PGSC0003DMT400005987	Potato	plastid	66.3	72.57
Solyc05g025820.2.1	Tomato	cytosol	63.86	70.59
CDY72324	Canola	cytosol, plasma membrane	49.67	70.22
Solyc07g041940.2.1	Tomato	cytosol, plastid	65.41	67.97
KRH52268	Soybean	plastid	56.32	67.91
CDX74646	Canola	endoplasmic reticulum, plasma membrane	67.41	67.56
Bra035394.1-P	Field mustard	endoplasmic reticulum, plasma membrane	67.41	67.56
PGSC0003DMT400071701	Potato	cytosol	65.19	66.97
CDY65349	Canola	cytosol	67.63	66.74
CDY33401	Canola	cytosol	67.41	66.52
AT2G05940.1	Thale cress	cytosol	68.07	66.45
KRH61599	Soybean	plasma membrane	55.88	66.32
Bra015174.1-P	Field mustard	cytosol	67.18	66.3
KRH05309	Soybean	plastid	55.88	65.28
KRH15727	Soybean	cytosol, mitochondrion, plastid	55.21	64.01
KRH06195	Soybean	plastid	57.43	57.43
AT5G35580.2	Thale cress	cytosol	64.3	57.31
KRH47613	Soybean	plastid	58.54	57.02
KRH43007	Soybean	cytosol	47.23	55.91
KRH39720	Soybean	plastid	52.33	55.79
KRH59124	Soybean	cytosol, mitochondrion	47.01	55.5
KRH76414	Soybean	plastid	52.77	53.6
KRH41391	Soybean	cytosol	45.01	53.56
KRH60107	Soybean	cytosol	45.01	53.56
KRH40618	Soybean	cytosol	51.0	53.24
KRH00549	Soybean	cytosol	51.22	52.38
KRG93514	Soybean	cytosol	28.16	52.26
KRH13000	Soybean	cytosol	19.73	50.0
KRH07729	Soybean	cytosol	48.12	49.43
KRG93513	Soybean	plastid	38.14	43.54
KRG93548	Soybean	cytosol	38.14	38.39

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100799411	MapMan:18.4.1.37.1	MapMan:26.8.2.2.3	Gene3D:3.30.200.20	EMBL:ACUP02008172
EnsemblPlantsGene:GLYMA_13G110700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004675
GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0038023	UniProt:I1LY63	InterPro:IPR000719	EnsemblPlants:KRH19325	ProteinID:KRH19325
ProteinID:KRH19325.1	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000615	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF123	InterPro:Prot_kinase_dom	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS
UniParc:UPI000233BD80	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:22425410..22427899

Molecular Weight (calculated)

50095.0 Da

IEP (calculated)

7.872

GRAVY (calculated)

-0.613

Length

451 amino acids

Sequence
(BLAST)

001: MGSSFSSCYE GESVSPSPKP TKVVATKGGS SSNRVSITDL SFPGSTLSED LSVSLVGSNL HVFSLSELKI ITQSFSSSNF LGEGGFGPVH KGFIDDKLRP
101: GLEAQPVAVK LLDLDGSQGH KEWLTEVVFL GQLRHPHLVK LIGYCCEEEH RLLVYEYLPR GSLENQLFRR YTASLPWSTR MKIAAGAAKG LAFLHEAKKP
201: VIYRDFKASN ILLDSDYNAK LSDFGLAKDG PEGDDTHVST RVMGTQGYAA PEYIMTGHLT AMSDVYSFGV VLLELLTGRR SVDKGRPQRE QNLVEWARPA
301: LNDSRKLGRI MDPRLEGQYS EVGARKAAAL AYQCLSHRPR SRPLMSTVVN VLEPLQDFDD VPIGPFVYTV PAEQHNEVAK ESETPKERKR ENDHHHHNRH
401: HHHHRHNGHR HHPLKSPKTP MSSDQSQNDE HRNGRRSGSN SPDTSNASEA Q

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.