CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19325	Soybean	nucleus	96.49	97.56
KRH12542	Soybean	cytosol	80.26	79.91
KRH37497	Soybean	plastid	79.61	78.4
VIT_11s0016g01060.t01	Wine grape	mitochondrion, plastid	71.05	73.3
PGSC0003DMT400005987	Potato	plastid	65.13	72.09
Solyc05g025820.2.1	Tomato	cytosol	62.94	70.34
CDY72324	Canola	cytosol, plasma membrane	48.46	69.28
KRH52268	Soybean	plastid	55.48	67.65
Solyc07g041940.2.1	Tomato	cytosol, plastid	64.25	67.51
CDX74646	Canola	endoplasmic reticulum, plasma membrane	66.01	66.89
Bra035394.1-P	Field mustard	endoplasmic reticulum, plasma membrane	66.01	66.89
CDY65349	Canola	cytosol	66.67	66.52
PGSC0003DMT400071701	Potato	cytosol	64.04	66.51
CDY33401	Canola	cytosol	66.45	66.3
Bra015174.1-P	Field mustard	cytosol	66.23	66.08
KRH61599	Soybean	plasma membrane	55.04	66.05
AT2G05940.1	Thale cress	cytosol	66.89	66.02
KRH05309	Soybean	plastid	54.82	64.77
KRH15727	Soybean	cytosol, mitochondrion, plastid	54.17	63.5
KRH06195	Soybean	plastid	56.58	57.21
KRH47613	Soybean	plastid	57.68	56.8
AT5G35580.2	Thale cress	cytosol	62.94	56.72
KRH43007	Soybean	cytosol	46.49	55.64
KRH39720	Soybean	plastid	51.54	55.56
KRH59124	Soybean	cytosol, mitochondrion	46.27	55.24
KRH41391	Soybean	cytosol	44.3	53.3
KRH60107	Soybean	cytosol	44.3	53.3
KRH76414	Soybean	plastid	51.75	53.15
KRH40618	Soybean	cytosol	50.0	52.78
KRH00549	Soybean	cytosol	50.22	51.93
KRG93514	Soybean	cytosol	27.41	51.44
KRH13000	Soybean	cytosol	19.52	50.0
KRH07729	Soybean	cytosol	47.37	49.2
KRG93513	Soybean	plastid	37.28	43.04
KRG93548	Soybean	cytosol	37.28	37.95

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100305397	MapMan:18.4.1.37.1	MapMan:26.8.2.2.3	Gene3D:3.30.200.20	EMBL:ACUP02010312
UniProt:C6ZRQ0	EMBL:FJ014740	EnsemblPlantsGene:GLYMA_17G048900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
EnsemblPlants:KRH02603	ProteinID:KRH02603	ProteinID:KRH02603.1	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000615
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF123	InterPro:Prot_kinase_dom	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0001B06FD1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:3716865..3719442

Molecular Weight (calculated)

50648.8 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.600

Length

456 amino acids

Sequence
(BLAST)

001: MGSSFSSCYE GESVSPSPKP TKVVATKGGS SSNRVSITDL SFPGSTLSED LSVSLVGSNL HVFSLAELKI ITQGFSSSNF LGEGGFGPVH KGFIDDKLRP
101: GLEAQPVAVK LLDLDGSQGH KEWLTEVVFL GQLRHPHLVK LIGYCCEEEH RLLVYEYLPR GSLENQLFRR YTASLPWSTR MKIAAGAAKG LAFLHEAKKP
201: VIYRDFKASN ILLDSDYNAK LSDFGLAKDG PEGDDTHVST RVMGTQGYAA PEYIMTGHLT AMSDVYSFGV VLLELLTGRR SVDKGRPQRE QNLVEWARSA
301: LNDSRKLSRI MDPRLEGQYS EVGARKAAAL AYQCLSHRPR SRPLMSTVVN VLEPLQDFDD VPIGPFVYTV PAEQQQYNEV AKESETPKER KRENGHHHNR
401: RHHHHRHNGH RHHPLKSPKT PMPSDQSQND EHRNGRKSGS NSPDTFNASE AQRSMG

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.