Factsheet for VIT_11s0016g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g01060.t01	Wine grape	mitochondrion, plastid	58.93	22.4
VIT_04s0008g02070.t01	Wine grape	cytosol	43.45	16.59
VIT_09s0002g01110.t01	Wine grape	mitochondrion	39.29	15.0
VIT_08s0056g00150.t01	Wine grape	cytosol	36.9	14.35
VIT_17s0000g05890.t01	Wine grape	cytosol	24.4	13.44
VIT_11s0065g00470.t01	Wine grape	cytosol	35.12	12.94
VIT_06s0004g00220.t01	Wine grape	mitochondrion, plastid	28.57	12.63
VIT_02s0087g00270.t01	Wine grape	plastid	30.36	12.03
VIT_01s0026g01870.t01	Wine grape	cytosol	17.86	7.71

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100267973	wikigene:100267973	EntrezGene:109123420	MapMan:35.1	ProteinID:CCB51393
ProteinID:CCB51393.1	UniProt:F6HGS9	EMBL:FN595756	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100267973	wikigene:LOC100267973	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF123	InterPro:Prot_kinase_dom
SUPFAM:SSF56112	UniParc:UPI0002107F5B	ArrayExpress:VIT_11s0016g01010	EnsemblPlantsGene:VIT_11s0016g01010	EnsemblPlants:VIT_11s0016g01010.t01	RefSeq:XP_003633090
RefSeq:XP_003633090.1	RefSeq:XP_019078678.1	RefSeq:XP_019078679.1	:	:	:

Description

No Description!

Coordinates

chr11:-:851344..852082

Molecular Weight (calculated)

19280.1 Da

IEP (calculated)

10.101

GRAVY (calculated)

-0.892

Length

168 amino acids

Sequence
(BLAST)

001: MSDVYSFGVV LLKLLTGRRS MDKTRPNREK NLAEWARPQL NYSRKLTRIM DPRVEGQYSE AGAQKAAALA YWCMSHMPKH RPTMSTVVKT LEPLQDYQDI
101: PIGPFMYTVQ SENDLHKEEI KEGGEAQKEP KKESSHQGHR LKIRSPKSQT IYSETALRQN LSKTTAQT

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.