Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G182400.1 | Wheat | plastid | 99.91 | 99.91 |
| TraesCS4D01G183400.1 | Wheat | plastid | 99.23 | 99.4 |
| HORVU4Hr1G053400.1 | Barley | plasma membrane | 98.71 | 98.54 |
| Os03t0309200-01 | Rice | nucleus, plasma membrane | 88.94 | 92.59 |
| Zm00001d028905_P001 | Maize | extracellular | 88.77 | 89.15 |
| EER94971 | Sorghum | plastid | 89.54 | 88.62 |
| Zm00001d047632_P001 | Maize | plastid | 87.99 | 87.99 |
| Zm00001d025231_P001 | Maize | cytosol | 11.06 | 80.62 |
| VIT_05s0077g00940.t01 | Wine grape | cytosol | 74.87 | 77.33 |
| PGSC0003DMT400061712 | Potato | cytosol, plastid | 73.07 | 75.4 |
| GSMUA_Achr3P08340_001 | Banana | nucleus | 69.73 | 74.66 |
| KRH36969 | Soybean | nucleus | 72.38 | 74.23 |
| Solyc01g059870.2.1 | Tomato | cytosol | 71.96 | 74.18 |
| Zm00001d000219_P001 | Maize | cytosol | 7.03 | 73.87 |
| KRH11936 | Soybean | nucleus | 72.56 | 73.63 |
| CDX92112 | Canola | cytosol | 70.58 | 72.58 |
| AT2G18790.1 | Thale cress | nucleus | 70.75 | 70.39 |
| Solyc05g053410.2.1 | Tomato | nucleus, plastid | 67.67 | 70.38 |
| CDX95888 | Canola | cytosol | 70.5 | 70.38 |
| PGSC0003DMT400069974 | Potato | mitochondrion | 67.75 | 70.22 |
| CDX75900 | Canola | cytosol | 69.3 | 69.96 |
| Bra022192.1-P | Field mustard | cytosol | 71.01 | 69.46 |
| AT4G16250.1 | Thale cress | plastid | 68.27 | 68.38 |
| Bra001650.1-P | Field mustard | cytosol | 8.23 | 62.75 |
| CDX82382 | Canola | cytosol | 9.35 | 59.24 |
| TraesCS5A01G391300.2 | Wheat | cytosol, plastid | 51.63 | 51.72 |
| TraesCS4A01G262900.1 | Wheat | mitochondrion | 46.48 | 47.96 |
| Zm00001d024238_P001 | Maize | cytosol | 16.47 | 43.64 |
| CDY42549 | Canola | cytosol | 8.06 | 41.59 |
Protein Annotations
| Gene3D:1.10.287.130 | MapMan:26.1.1.1 | MapMan:26.4.1.2 | Gene3D:3.30.450.20 | Gene3D:3.30.450.270 | Gene3D:3.30.450.40 |
| Gene3D:3.30.565.10 | InterPro:GAF | InterPro:GAF-like_dom_sf | GO:GO:0000155 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009584 |
| GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009881 | GO:GO:0009987 | GO:GO:0016301 |
| GO:GO:0016740 | GO:GO:0017006 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0038023 | GO:GO:0042803 |
| InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:HisK_dim/P | InterPro:HisK_dim/P_sf | InterPro:His_kinase_dom | InterPro:IPR000014 |
| InterPro:IPR005467 | InterPro:IPR016132 | InterPro:IPR029016 | InterPro:IPR036890 | InterPro:PAS | InterPro:PAS-like_dom_sf |
| InterPro:PAS_2 | InterPro:PAS_fold | PFAM:PF00360 | PFAM:PF00512 | PFAM:PF00989 | PFAM:PF01590 |
| PFAM:PF02518 | PFAM:PF08446 | PIRSF:PIRSF000084 | PRINTS:PR01033 | ScanProsite:PS00245 | PFscan:PS50046 |
| PFscan:PS50109 | PFscan:PS50112 | PANTHER:PTHR43719 | PANTHER:PTHR43719:SF12 | InterPro:Phyto_chromo_BS | InterPro:Phyto_chromo_attachment |
| InterPro:Phytochrome | InterPro:Phytochrome_A-E | InterPro:Phytochrome_cen-reg | SMART:SM00065 | SMART:SM00091 | SMART:SM00387 |
| SMART:SM00388 | SUPFAM:SSF47384 | SUPFAM:SSF55781 | SUPFAM:SSF55785 | SUPFAM:SSF55874 | TIGRFAMs:TIGR00229 |
| EnsemblPlantsGene:TraesCS4A01G122500 | EnsemblPlants:TraesCS4A01G122500.2 | TIGR:cd00075 | TIGR:cd00082 | TIGR:cd00130 | SEG:seg |
Description
No Description!
Coordinates
chr4A:+:151945914..151953261
Molecular Weight (calculated)
127687.0 Da
IEP (calculated)
5.959
GRAVY (calculated)
-0.127
Length
1166 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASGSRATPT RSPSSARPAA PHQNHTQSSG GSTSRAGGGG GGAAGSAAAT ESVSKAVAQY TLDAGLHAVF EQSGASGRSF DYSQSLLAPP TPSSEQQIAA
0101: YLSRIQRGGH IQPFGCTLAV ADDSSFRLLA FSENAADLLD LSPHHSVPSL DSSAAPPPVS LGADARLLFS PSSGVLLERA FAAREISLLN PLWIHSRVSS
0201: KPFYAILHRI DVGVVIDLEP ARTEDPALSI AGAVQSQKLA VRAISRLQAL PGGDVKLLCD TVVEHVRELT GYDRVMVYKF HDDEHGEVLA ESRRGDLEPY
0301: LGLHYPATDI PQASRFLFRQ NRVRMIADCH AAAVRVIQDP AMPQPLCLVG STLRSPHGCH AQYMANMGSI ASLVMAVIIS SGGEDEHNMT RGVIPSAMKL
0401: WGLVVCHHTS PRCIPFPLRY ACEFLMQAFG LQLNMELQLA HQLSEKHILR TQTLLCDMLL RDSPTGIVTQ SPSIMDLVKC DGAALFYHGK YYPLGVTPTE
0501: AQIKDIIEWL TVCHGDSTGL STDSLADAGY PGATALGDAV CGMAVAYITP SDYLFWFRSH TAKEIKWGGA KHHPEDKDDG QRMHPRSSFK AFLEVVKSRS
0601: LPWENAEMDA IHSLQLILRD SFRDAGEGTS NSKAIVNGQV QLGELELRGI DELSSVAREM VRLIETATVP IFAVDTYGCI NGWNAKVAEL TGLTVEEAMG
0701: KSLVKDLIFK ESEEIVEKLL SQALKGEEGT NVEIKLKTFG SEQSKGPIFV IVNACSSRDY TKSIVGVCFV GQDITGQKVV MDKFVNIQGD YKAIVHNPNP
0801: LIPPIFASDE NICCSEWNTA MEKLTGWSRG EVVGKLLVGE VFGNCCRLKG PDALTKFMIV LHNAIGGQDS EKSPFSFFDK NGKYVQALLT ANTRSKMDGE
0901: TIGAFCFLQI ASPELQQAFE IQRQQEKKCY ARMKELAYIC QEIKNPLSGI RFTNSLLEMT DLKDDQRQFL ETSAACEKQM SKIVKDASLQ SIEDGSLVLE
1001: KGEFSLGNVM NAVVSQVMIL LRERDLQLIR DIPDEIKEAS AYGDQYRIQQ VLSDFLLSMV RFAPTENGWV EIQVRPNVKQ NSDGTETMLF LFRFACPGEG
1101: LPPDIVQDMF SNARWTTQEG IGLSVCRKIL KLMGGEVQYI RESERSFFLI VLELPQPLRS ESRDRS
0101: YLSRIQRGGH IQPFGCTLAV ADDSSFRLLA FSENAADLLD LSPHHSVPSL DSSAAPPPVS LGADARLLFS PSSGVLLERA FAAREISLLN PLWIHSRVSS
0201: KPFYAILHRI DVGVVIDLEP ARTEDPALSI AGAVQSQKLA VRAISRLQAL PGGDVKLLCD TVVEHVRELT GYDRVMVYKF HDDEHGEVLA ESRRGDLEPY
0301: LGLHYPATDI PQASRFLFRQ NRVRMIADCH AAAVRVIQDP AMPQPLCLVG STLRSPHGCH AQYMANMGSI ASLVMAVIIS SGGEDEHNMT RGVIPSAMKL
0401: WGLVVCHHTS PRCIPFPLRY ACEFLMQAFG LQLNMELQLA HQLSEKHILR TQTLLCDMLL RDSPTGIVTQ SPSIMDLVKC DGAALFYHGK YYPLGVTPTE
0501: AQIKDIIEWL TVCHGDSTGL STDSLADAGY PGATALGDAV CGMAVAYITP SDYLFWFRSH TAKEIKWGGA KHHPEDKDDG QRMHPRSSFK AFLEVVKSRS
0601: LPWENAEMDA IHSLQLILRD SFRDAGEGTS NSKAIVNGQV QLGELELRGI DELSSVAREM VRLIETATVP IFAVDTYGCI NGWNAKVAEL TGLTVEEAMG
0701: KSLVKDLIFK ESEEIVEKLL SQALKGEEGT NVEIKLKTFG SEQSKGPIFV IVNACSSRDY TKSIVGVCFV GQDITGQKVV MDKFVNIQGD YKAIVHNPNP
0801: LIPPIFASDE NICCSEWNTA MEKLTGWSRG EVVGKLLVGE VFGNCCRLKG PDALTKFMIV LHNAIGGQDS EKSPFSFFDK NGKYVQALLT ANTRSKMDGE
0901: TIGAFCFLQI ASPELQQAFE IQRQQEKKCY ARMKELAYIC QEIKNPLSGI RFTNSLLEMT DLKDDQRQFL ETSAACEKQM SKIVKDASLQ SIEDGSLVLE
1001: KGEFSLGNVM NAVVSQVMIL LRERDLQLIR DIPDEIKEAS AYGDQYRIQQ VLSDFLLSMV RFAPTENGWV EIQVRPNVKQ NSDGTETMLF LFRFACPGEG
1101: LPPDIVQDMF SNARWTTQEG IGLSVCRKIL KLMGGEVQYI RESERSFFLI VLELPQPLRS ESRDRS
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.