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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plastid

Predictor Summary:
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS5A01G225500.1
TraesCS5A01G225600.1
TraesCS5B01G224000.1
TraesCS5B01G224100.1
TraesCS5D01G232700.1
TraesCS5D01G232800.1
TraesCS5D01G232900.1
TraesCS6A01G146900.1
TraesCS6B01G175100.2
TraesCS6D01G136200.1
TraesCS7A01G508700.1
TraesCS7A01G508800.1
TraesCS7A01G509000.1
TraesCS7B01G418400.1
TraesCS7B01G418500.2
TraesCS7B01G418600.1
TraesCS7B01G419400.1
TraesCS7D01G497300.1
TraesCS7D01G497400.1
TraesCS7D01G497700.1
TraesCS7D01G497800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G15450.1 TraesCS5A01G225500.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5A01G225600.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5B01G224000.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5B01G224100.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5D01G232700.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5D01G232800.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5D01G232900.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS6A01G146900.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS6B01G175100.2 AT2G25000.1 21798944
AT5G15450.1 TraesCS6D01G136200.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7A01G508700.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7A01G508800.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7A01G509000.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7B01G418400.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7B01G418500.2 AT2G25000.1 21798944
AT5G15450.1 TraesCS7B01G418600.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7B01G419400.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7D01G497300.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7D01G497400.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7D01G497700.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7D01G497800.1 AT2G25000.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCSU01G131300.1 Wheat plastid 98.77 99.07
TraesCS4B01G380800.1 Wheat plastid 98.87 98.77
Os03t0426900-01 Rice plastid 91.17 90.8
Zm00001d047302_P002 Maize plastid 90.25 90.25
Zm00001d029557_P001 Maize plastid 90.45 90.08
HORVU4Hr1G090440.2 Barley plastid 97.64 89.89
EER94678 Sorghum plastid 90.35 89.52
GSMUA_Achr6P16670_001 Banana plastid 77.31 80.36
VIT_14s0108g01500.t01 Wine grape plastid 79.26 79.1
KRH18417 Soybean nucleus 79.06 78.73
KRG93616 Soybean nucleus 78.85 78.53
Bra023518.1-P Field mustard plastid 77.52 78.4
AT5G15450.1 Thale cress plastid 77.82 78.31
KRH01254 Soybean nucleus, plastid 78.13 78.13
KRH44979 Soybean nucleus, plastid 78.13 78.13
CDX90991 Canola plastid 77.1 77.9
PGSC0003DMT400003652 Potato cytosol, plastid 78.23 77.83
Solyc02g088610.2.1 Tomato plastid 78.03 77.55
CDX85551 Canola plastid 52.05 77.52
Bra008698.1-P Field mustard plastid 77.41 77.49
CDX69524 Canola plastid 77.41 77.49
CDY26423 Canola plastid 77.41 77.49
CDX85552 Canola cytosol 20.02 76.47
TraesCS6A01G146400.1 Wheat mitochondrion 65.61 64.48
TraesCS3A01G274400.1 Wheat cytosol 44.76 47.75
TraesCS1A01G340100.1 Wheat nucleus 44.97 47.71
TraesCS3A01G106800.1 Wheat cytosol 31.01 47.71
TraesCS7A01G048300.1 Wheat cytosol 29.36 47.51
TraesCS7A01G456700.1 Wheat mitochondrion 23.0 47.36
TraesCS4A01G267200.1 Wheat cytosol, plastid 32.55 47.24
TraesCS1A01G304800.1 Wheat cytosol 32.65 46.83
TraesCS7A01G050300.1 Wheat endoplasmic reticulum 29.57 46.3
TraesCS3A01G090400.1 Wheat cytosol 24.54 46.14
TraesCS7A01G050400.1 Wheat endoplasmic reticulum 29.36 45.98
TraesCS3A01G124200.1 Wheat mitochondrion 27.1 45.91
TraesCS4A01G436900.1 Wheat endoplasmic reticulum 29.26 45.82
TraesCS4A01G437000.1 Wheat endoplasmic reticulum, mitochondrion 27.82 45.32
TraesCS5A01G046800.1 Wheat cytosol 22.59 44.9
TraesCS5A01G062800.1 Wheat mitochondrion 31.83 44.67
TraesCS7A01G048500.1 Wheat endoplasmic reticulum 28.95 44.48
TraesCS4A01G324100.1 Wheat cytosol 29.06 44.36
TraesCS7A01G048400.1 Wheat cytosol 29.16 44.17
TraesCS4A01G443200.1 Wheat cytosol 28.34 42.92
TraesCS4A01G436600.1 Wheat endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 29.26 42.92
TraesCS4A01G443300.1 Wheat plastid 28.13 42.61
TraesCS4A01G226000.1 Wheat mitochondrion, plastid 33.78 42.56
TraesCS6A01G195200.1 Wheat plastid 39.53 42.03
TraesCS7A01G050700.1 Wheat extracellular 28.64 42.02
TraesCS5A01G118900.1 Wheat unclear 39.43 41.74
TraesCS2A01G287300.2 Wheat plastid 37.88 41.23
TraesCS4A01G232800.1 Wheat plastid 38.19 39.66
TraesCS7A01G050600.1 Wheat endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 23.51 38.75
TraesCS5A01G321300.1 Wheat plastid 36.34 38.23
TraesCS2A01G291100.1 Wheat plastid 36.76 37.84
TraesCS4A01G232900.1 Wheat cytosol 4.93 34.78
TraesCS4A01G324200.1 Wheat cytosol 3.49 31.48
Protein Annotations
Gene3D:1.10.1780.10Gene3D:1.10.8.60MapMan:26.4.2.4Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:ATPase_AAA_core
InterPro:Chaperonin_ClpBInterPro:ClpA/BInterPro:ClpA/B_CS1InterPro:ClpA/B_CS2InterPro:Clp_ATPase_CInterPro:Clp_N
InterPro:Clp_N_dom_sfncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009408GO:GO:0009507GO:GO:0009532GO:GO:0009536GO:GO:0009570
GO:GO:0009628GO:GO:0009658GO:GO:0009987GO:GO:0016043GO:GO:0019538GO:GO:0042026
InterPro:IPR036628InterPro:P-loop_NTPasePFAM:PF00004PFAM:PF02861PFAM:PF07724PFAM:PF10431
PRINTS:PR00300ScanProsite:PS00870ScanProsite:PS00871PANTHER:PTHR11638PANTHER:PTHR11638:SF144SMART:SM00382
SMART:SM01086SUPFAM:SSF52540SUPFAM:SSF81923TIGRFAMs:TIGR03346EnsemblPlantsGene:TraesCS5A01G547300EnsemblPlants:TraesCS5A01G547300.1
TIGR:cd00009SEG:seg::::
Description
No Description!
Coordinates
chr5A:+:701070086..701075789
Molecular Weight (calculated)
108631.0 Da
IEP (calculated)
7.088
GRAVY (calculated)
-0.430
Length
974 amino acids
Sequence
(BLAST)
001: MATAPPPALA ADLHISYPAA APAPAVAAAA WGSSRRAAGP SSTRAALRAA RGRGRVAPVV GTGRTALSVR CNASSRDGRI TQQEFTEMAW QSIVLAPEVA
101: KESKHQIVET EHLMKSLLEQ RNGLARRIFS KAGVDNTRLL DATEKYIQRQ PKVLGEDPGS MLGRDLEALI QRARNFKKEY GDSFVSVEHI VLGFADDKRF
201: GRQLFKDFQI TVEALKTAIE SIRGKQNVID QDPEGKYEAL DKYGKDLTAM ARQGKLDPVI GRDDEIRRCI QILSRRTKNN PVLIGEPGVG KTAIAEGLAQ
301: RIVQGDVPQA LTNRRLITLD MGALIAGAKY RGEFEDRLKA VLKEVTDSDG QVVLFIDEIH TVVGAGATSG AMDAGNLLKP MLGRGELRCI GATTLDEYRK
401: YIEKDPALER RFQQVYVDQP TVEDTVSILR GLRERYELHH GVRISDSALV AAALLSDRYI SGRFLPDKAI DLVDESAAKL KMEITSKPTA LDEIDRSVLK
501: LEMERLSLTN DTDKASRDRL SRIEAELALL KERQKGLTEQ WEREKSVMTK IQSIKEEIDR LNVEIQQAER EYDLNRAAEL KYGSLNALQR DLQKTEDELN
601: EYQSSGKSML REEVTQDDIA EIVSRWTGIP VSKLKQSDRE KLLYLEDELH KRVVGQDPAV KAVAEAIQRS RAGLSDPNRP IASFMFMGPT GVGKTELAKA
701: LASFMFNTED AVVRIDMSEY MEKHSVSRLI GAPPGYVGYE EGGQLTEAVR RRPYSVVLFD EIEKAHSDVF NVFLQILDDG RVTDSQGRKV SFTNSIIIMT
801: SNVGSQYILN MDEEAGVTDS AYESMKKRVM DAARSVFRPE FMNRVDEYIV FKPLERKQIN SIVKLQLARV QKRIADRKIK LDVSPAAIEF LGSLGYDPNY
901: GARPVKRVLQ QYVENELAKG ILRGEFKDED SISVDTQVTV PSNGQLPQQK LVFRKTNEES KPAAAQDEKF LPTV
Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)
001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK
Arabidopsis Description
CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.