Factsheet for HORVU4Hr1G090440.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G065380.2
HORVU5Hr1G065420.15
HORVU6Hr1G028790.1
HORVU7Hr1G113830.1
HORVU7Hr1G113850.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	HORVU5Hr1G065380.2	AT2G25000.1	21798944
AT5G15450.1	HORVU5Hr1G065420.15	AT2G25000.1	21798944
AT5G15450.1	HORVU6Hr1G028790.1	AT2G25000.1	21798944
AT5G15450.1	HORVU7Hr1G113830.1	AT2G25000.1	21798944
AT5G15450.1	HORVU7Hr1G113850.4	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G131300.1	Wheat	plastid	90.08	98.15
TraesCS5A01G547300.1	Wheat	golgi, plastid	89.89	97.64
TraesCS4B01G380800.1	Wheat	plastid	89.89	97.54
Os03t0426900-01	Rice	plastid	83.46	90.29
Zm00001d047302_P002	Maize	plastid	82.99	90.14
Zm00001d029557_P001	Maize	plastid	82.99	89.78
EER94678	Sorghum	plastid	82.99	89.32
GSMUA_Achr6P16670_001	Banana	plastid	71.64	80.9
VIT_14s0108g01500.t01	Wine grape	plastid	73.06	79.2
KRH18417	Soybean	nucleus	73.16	79.14
KRG93616	Soybean	nucleus	72.97	78.94
Bra023518.1-P	Field mustard	plastid	71.46	78.5
KRH44979	Soybean	nucleus, plastid	72.12	78.34
KRH01254	Soybean	nucleus, plastid	72.12	78.34
PGSC0003DMT400003652	Potato	cytosol, plastid	72.4	78.24
AT5G15450.1	Thale cress	plastid	71.55	78.2
CDX90991	Canola	plastid	71.08	78.01
Solyc02g088610.2.1	Tomato	plastid	72.21	77.96
Bra008698.1-P	Field mustard	plastid	71.46	77.7
CDX69524	Canola	plastid	71.46	77.7
CDX85551	Canola	plastid	48.02	77.68
CDY26423	Canola	plastid	71.36	77.6
CDX85552	Canola	cytosol	18.43	76.47
HORVU6Hr1G028690.1	Barley	mitochondrion	60.49	65.04
HORVU5Hr1G123460.3	Barley	mitochondrion	23.82	52.83
HORVU5Hr1G102460.1	Barley	cytosol	7.28	50.0
HORVU1Hr1G076190.4	Barley	nucleus	41.59	48.03
HORVU7Hr1G105430.1	Barley	cytosol	25.43	47.95
HORVU7Hr1G008950.1	Barley	cytosol, plastid	10.78	47.9
HORVU3Hr1G071120.7	Barley	cytosol	41.02	47.48
HORVU7Hr1G008380.2	Barley	cytosol	13.04	47.26
HORVU7Hr1G105530.1	Barley	cytosol	28.73	46.27
HORVU5Hr1G102440.2	Barley	mitochondrion, plastid	29.02	45.96
HORVU7Hr1G008940.2	Barley	cytosol	27.03	45.04
HORVU1Hr1G068970.1	Barley	cytosol	30.15	44.24
HORVU7Hr1G035110.4	Barley	cytosol	18.15	43.64
HORVU5Hr1G081860.1	Barley	cytosol	31.47	43.59
HORVU1Hr1G076100.1	Barley	cytosol	6.62	42.94
HORVU2Hr1G071080.3	Barley	plastid	36.58	42.2
HORVU6Hr1G063810.3	Barley	plastid	11.25	42.2
HORVU4Hr1G008860.1	Barley	cytosol, peroxisome	8.7	42.01
HORVU7Hr1G009000.2	Barley	cytosol	13.89	41.76
HORVU7Hr1G105270.3	Barley	cytosol	27.79	41.18
HORVU2Hr1G072020.5	Barley	plastid	31.95	40.53
HORVU4Hr1G014120.2	Barley	plastid	35.35	39.87
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	36.01	39.16

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	UniProt:A0A287Q4H7	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536
GO:GO:0009570	GO:GO:0009628	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0016485
GO:GO:0019538	GO:GO:0042026	EnsemblPlantsGene:HORVU4Hr1G090440	EnsemblPlants:HORVU4Hr1G090440.2	InterPro:IPR036628	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF144	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	TIGRFAMs:TIGR03346	UniParc:UPI000B4625EC	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr4H:+:645151658..645157898

Molecular Weight (calculated)

117730.0 Da

IEP (calculated)

8.443

GRAVY (calculated)

-0.467

Length

1058 amino acids

Sequence
(BLAST)

0001: PPPNHLLPPS TASSCIPEPP RTPHAATPVT APAVRPSTPS FYTTIHPTPS ASGRRQIIRR DTYGTTSTAA RHFTPHSPPV QEPKAPGAMA AALAADLRIS
0101: YPAAAPAPAV AAAAWGSSRT AKGPSSPRVA LRAARGRGRL APVTGTPRTA LSVRCNASSR DGRITQQEFT EMAWQSIVLA PEVAKESKHQ IVETEHLMKS
0201: LLEQRNGLAR RIFSKAGVDN TRLLEATEKY IQRQPKVLGE DPGSMLGRDL EALIQRARNY KKEYGDSFVS VEHIVLGFAD DKRFGRQLFK DFQITVETLK
0301: TAIESIRGKQ NVIDQDPEGK YEALDKYGKD LTAMARQGKL DPVIGRDDEI RRCIQILSRR TKNNPVLIGE PGVGKTAIAE GLAQRIVQGD VPQALTNRRL
0401: ITLDMGALIA GAKYRGEFED RLKAVLKEVT DSDGQVILFI DEIHTVVGAG ATSGAMDAGN LLKPMLGRGE LRCIGATTLD EYRKYIEKDP ALERRFQQVY
0501: VDQPTVEDTV SILRGLRERY ELHHGVRISD SALVAAAVLS DRYISGRFLP DKAIDLVDES AAKLKMEITS KPTVLDEIDR SVLKLEMERL SLTNDTDKAS
0601: RDRLSRIEAE LSLLKERQKG LTEQWEHEKS VMTKIQSIKE EIDRLNVEIQ QAEREYDLNR AAELKYGSLN ALQRDLQKTE DELNEYQNSG KSMLREEVTQ
0701: DDIAEIVSRW TGIPVSKLKQ SDREKLLYLE DELHKRVVGQ DPAVKAVAEA IQRSRAGLSD PNRPIASFMF MGPTGVGKTE LAKALASFMF NTEDAVVRID
0801: MSEYMEKHSV SRLIGAPPGY VGYEEGGQLT EAVRRRPYSV VLFDEIEKAH SDVFNVFLQI LDDGRVTDSQ GRKVSFTNSI IIMTSNVGSQ YILNMDEEGG
0901: ATDSAYESMK KRVMDAARSV FRPEFMNRVD EYIVFKPLER KQINSIVKLQ LARVQKRIAD RKIKLDVSPS AIEFLGSLGY DPNYGARPVK RVLQQYVENE
1001: LAKGILRGEF KDEDSISVDT QVTVPSNGQL PQQKLVFRKM NEESKPAAAQ DEKFLPTV

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.