Factsheet for HORVU6Hr1G028690.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1
HORVU6Hr1G069310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25140.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT2G25140.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G135600.1	Wheat	golgi	97.36	96.67
TraesCS6A01G146400.1	Wheat	mitochondrion	97.26	96.57
TraesCS6B01G174500.1	Wheat	mitochondrion	97.05	96.37
Os02t0181900-01	Rice	mitochondrion	88.92	89.01
EES06386	Sorghum	mitochondrion	89.33	88.79
Zm00001d015520_P001	Maize	mitochondrion	89.02	88.66
Solyc06g011380.2.1	Tomato	cytosol, plastid	17.07	81.95
GSMUA_Achr9P22420_001	Banana	cytosol	72.66	80.97
KRH61688	Soybean	mitochondrion	75.0	75.77
KRH52355	Soybean	cytosol, mitochondrion	49.9	75.42
VIT_04s0008g05870.t01	Wine grape	mitochondrion	73.07	74.74
CDX76768	Canola	mitochondrion	73.58	74.41
CDY56280	Canola	mitochondrion	73.58	74.33
Bra007816.1-P	Field mustard	mitochondrion	73.48	74.23
AT2G25140.1	Thale cress	mitochondrion	71.54	73.03
CDY64721	Canola	cytosol	17.48	70.49
Bra032044.1-P	Field mustard	mitochondrion	53.76	66.62
CDY53470	Canola	mitochondrion	53.66	66.58
CDY68892	Canola	mitochondrion, plastid	54.67	64.9
HORVU4Hr1G090440.2	Barley	plastid	65.04	60.49
HORVU5Hr1G123460.3	Barley	mitochondrion	24.59	50.73
HORVU5Hr1G102460.1	Barley	cytosol	7.72	49.35
HORVU7Hr1G105430.1	Barley	cytosol	26.93	47.24
HORVU7Hr1G008950.1	Barley	cytosol, plastid	11.38	47.06
HORVU7Hr1G008380.2	Barley	cytosol	13.82	46.58
HORVU1Hr1G076190.4	Barley	nucleus	43.19	46.4
HORVU3Hr1G071120.7	Barley	cytosol	42.78	46.06
HORVU5Hr1G102440.2	Barley	mitochondrion, plastid	30.79	45.36
HORVU7Hr1G105530.1	Barley	cytosol	29.98	44.9
HORVU1Hr1G076100.1	Barley	cytosol	7.32	44.17
HORVU7Hr1G008940.2	Barley	cytosol	28.46	44.09
HORVU2Hr1G071080.3	Barley	plastid	40.45	43.4
HORVU5Hr1G081860.1	Barley	cytosol	33.44	43.06
HORVU7Hr1G035110.4	Barley	cytosol	19.21	42.95
HORVU4Hr1G008860.1	Barley	cytosol, peroxisome	9.35	42.01
HORVU1Hr1G068970.1	Barley	cytosol	30.49	41.61
HORVU4Hr1G014120.2	Barley	plastid	38.92	40.83
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	40.35	40.8
HORVU6Hr1G063810.3	Barley	plastid	11.69	40.78
HORVU7Hr1G105270.3	Barley	cytosol	29.27	40.34
HORVU7Hr1G009000.2	Barley	cytosol	14.33	40.06
HORVU2Hr1G072020.5	Barley	plastid	33.74	39.81

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EMBL:AK357652
InterPro:ATPase_AAA_core	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	UniProt:F2D195	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0016485	GO:GO:0019538	GO:GO:0042026	EnsemblPlantsGene:HORVU6Hr1G028690	EnsemblPlants:HORVU6Hr1G028690.1
InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86	SMART:SM00382
SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	TIGRFAMs:TIGR03346	UniParc:UPI00020050E9	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D195]

Coordinates

chrchr6H:-:114383996..114391210

Molecular Weight (calculated)

109244.0 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.320

Length

984 amino acids

Sequence
(BLAST)

001: MALSAASRLS RAARAAAVAR RLAAGSREPL PRALAPLAGE TSFSTATKVS RPSWFAPPMA RLPAGGGGGL LVPPRRLFHS TPPARYSASS SSSSQITPGD
101: FTEMAWEGVA GAVDAARLSK QQIVESEHLM KALLEQKDGL ARRIFSKAGI DNTSVLQATD DFIAKQPKVS GDTSGPVVGQ SFTLVLDKAM KYKKEYGDEF
201: VSVEHMLRAF TADKRFGQQL FKDLQIGENE LKEAISAVRG SQRVTDQNPE GKFQALEKYG IDMTELARRG KLDPVIGRDD EVRRCIQILC RRTKNNPVII
301: GEPGVGKTAI AEGLAQRIVR GDVPEPLQNR KLISLDMGAL LAGSKYRGEF EERLKAVLKE VTASNGQIIL FIDEIHTVVG AGATGGAMDA GNLLKPMLGR
401: GELRCIGATT LDEYRKYIEK DAALERRFQQ VYCGEPAVED TVSILRGLRE RYEMHHGVKI SDGALVAAAV LSDRYITGRF LPDKAIDLVD EAAAKLKMEI
501: TSKPIELDEV DREIIRFEME KLSLKNDTDK ASKERLSKLE AELESLKQKQ KNLSEHWEYE KSLMTRIKSI KEEIDRVNLE IEAAEREYNL SRAAELKYST
601: LLTLQKQLDE AEENLTKFQQ SGKSMLREEV TDVDIAEIVS KWTGIPVSNL QQSDREKLLL LEDVLHKRVI GQDIAVKSVA NAIRRSRAGL SDPNRPIASF
701: MFMGPTGVGK TELGKTLAEF LFNTENALIR IDMSEYMEKH AVSRLVGAPP GYVGYEEGGQ LSEAVRRRPY SVVLFDEIEK AHQDVFNILL QLLDDGRITD
801: SQGRTVSFTN CVIIMTSNIG SPLILDTLRN TTDSKDAVYE VMKKQVTEIA RQTFRPEFLN RIDEYIVFQP LDSTEINRIV EIQLDRVKNR LLQQKIHLQY
901: TPEAVEHLGA LGFDPNYGAR PVKRVIQQMV ENEIALAVLK GDFKEDDTVV VDVSSVSIAK GFAPKKQLVL QRLESGNTEL VANV

Best Arabidopsis Sequence Match ( AT2G25140.1 )
(BLAST)

001: MALRRLSKSV SSAIKAQYTL SRPSPLLRSR SLSSSPHYTS IGRPTNSFIG KINNSSITHA TTTHGQLFPL SSPRRFCTTT AQVNQNEFTE MAWEGLINAF
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA

Arabidopsis Description

CLPB4Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.