Factsheet for Zm00001d015520_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06386	Sorghum	mitochondrion	96.96	96.77
Os02t0181900-01	Rice	mitochondrion	91.3	91.76
HORVU6Hr1G028690.1	Barley	mitochondrion	88.66	89.02
TraesCS6A01G146400.1	Wheat	mitochondrion	88.46	88.19
TraesCS6D01G135600.1	Wheat	golgi	88.36	88.09
TraesCS6B01G174500.1	Wheat	mitochondrion	88.16	87.89
GSMUA_Achr9P22420_001	Banana	cytosol	73.68	82.45
Zm00001d047302_P002	Maize	plastid	65.99	66.94
Zm00001d029557_P001	Maize	plastid	65.69	66.36
Zm00001d029672_P004	Maize	plastid	11.34	47.86
Zm00001d038806_P001	Maize	nucleus	43.42	47.04
Zm00001d024009_P001	Maize	plastid	40.38	43.32
Zm00001d003894_P004	Maize	plastid	39.98	42.89
Zm00001d025273_P019	Maize	plastid	39.88	42.78
Zm00001d036813_P001	Maize	cytosol	4.76	41.59
Zm00001d003847_P001	Maize	plastid	35.53	37.66
Zm00001d016664_P001	Maize	plastid	35.12	36.64
Zm00001d039640_P001	Maize	cytoskeleton, cytosol, nucleus	5.47	36.0
Zm00001d008786_P001	Maize	plastid	4.86	26.97
Zm00001d039497_P002	Maize	nucleus	1.01	13.16

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100217072	MapMan:26.4.2.4	Gene3D:3.40.50.300	UniProt:A0A1D6H2L6
InterPro:AAA+_ATPase	ProteinID:AQK69080.1	InterPro:ATPase_AAA_core	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408
GO:GO:0009628	GO:GO:0009987	GO:GO:0016485	GO:GO:0019538	GO:GO:0042026	InterPro:IPR036628
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	TIGRFAMs:TIGR03346	UniParc:UPI000220F0DD	EnsemblPlantsGene:Zm00001d015520	EnsemblPlants:Zm00001d015520_P001
EnsemblPlants:Zm00001d015520_T001	SEG:seg	:	:	:	:

Description

Chaperone protein ClpB4 mitochondrial

Coordinates

chr5:-:95614609..95620842

Molecular Weight (calculated)

109558.0 Da

IEP (calculated)

6.439

GRAVY (calculated)

-0.311

Length

988 amino acids

Sequence
(BLAST)

001: MARSAASRLA RAARAVVVAT KRRQGPGVSR EVLPRSLAPL AGDASAFGAT TGRPAWFAAP LGRFPVGAGG AGLQVPPRRL FHSTTPAQYS AAGTSSSSQI
101: TPGEFTEMAW EGIVGAVDAA RLSKQQIVES EHLMKALLEQ KDGLARRIFS KAGVDNTSVL QATDDFISRQ PKVVGDTTGP IIGSSFVLIL DNAKKHKKEH
201: GDEFVSVEHI LQAFTSDKRF GQQLFKDLKI VENDLKEAIS AVRGSQRVTD QNPEGKYQAL EKYGIDLTES ARRGKLDPVI GRDDEVRRCI QILCRRTKNN
301: PVIIGEPGVG KTAIAEGLAQ RIVRGDVPEP LMNRRLISLD MGALLAGAKF RGDFEERLKA VLKEVTASNG QIILFIDEIH TVVGAGAAGG AMDAGNLLKP
401: MLGRGELRCI GATTLDEYRK YIEKDAALER RFQQVYCGEP AVEDTISILR GLRERYELHH GVKISDGALV AAAVLSDRYI TGRFLPDKAI DLVDEAAAKL
501: KMEITSKPIE LDEVDREIIR LEMEKLSLKN DTDKASKERL SKLEAELESL KQKQKSLSEH WEYEKSLMTR IRSIKEETDR VNLEIEAAER EYDLNRAAEL
601: KYGTLLSLQK QLEEAENKLV EFQQSGKSML REEVTDVDIA EIVSKWTGIP VSNLQQSERE KLLLLEDVLH KRVIGQDIAV KSVANAIRRS RAGLSDPNRP
701: IASFMFMGPT GVGKTELGKT LAEFLFNTEN ALIRIDMSEY MEKHAVSRLV GAPPGYVGYE EGGQLTESVR RRPYSVVLFD EIEKAHQEVF NILLQLLDDG
801: RITDSQGRTV SFTNCVIIMT SNIGSPLILD TLRNTTDSKE AVYEIMKKQV IEMARQTFRP EFLNRIDEYI VFQPLDTTEI NHIVEIQLNR VQNRLRQQKI
901: HLQYTAEAVE LLGSLGFDPN YGARPVKRVI QQMVENEIAL GVLKGDFKED DTVLVDVSSA AIAKGLAPQK KLVLQRVENG NDELVAND

Best Arabidopsis Sequence Match ( AT2G25140.1 )
(BLAST)

001: MALRRLSKSV SSAIKAQYTL SRPSPLLRSR SLSSSPHYTS IGRPTNSFIG KINNSSITHA TTTHGQLFPL SSPRRFCTTT AQVNQNEFTE MAWEGLINAF
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA

Arabidopsis Description

CLPB4Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.