Factsheet for Zm00001d003894_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 14966246

msms PMID: 14966246 doi

PM Lonosky, X Zhang, VG Honavar, DL Dobbs, A Fu, SR Rodermel

Department of Genetics, Iowa State University, Ames, Iowa 50011, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT5G50920.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT5G50920.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12052	Sorghum	plastid	99.13	99.13
Zm00001d025273_P019	Maize	plastid	99.02	99.02
Os04t0397100-01	Rice	plastid	43.11	98.51
GSMUA_Achr6P08050_001	Banana	cytosol	13.46	97.64
TraesCS2D01G285800.1	Wheat	plastid	96.09	96.51
TraesCS2B01G304200.1	Wheat	golgi	95.98	96.4
HORVU2Hr1G071080.3	Barley	plastid	95.98	96.4
TraesCS2A01G287300.2	Wheat	plastid	93.59	96.31
GSMUA_Achr6P08040_001	Banana	cytosol	64.06	91.61
CDX84888	Canola	cytosol	81.54	90.81
CDY64710	Canola	cytosol	79.8	89.42
GSMUA_Achr3P18630_001	Banana	plastid	86.43	88.15
Solyc12g042060.1.1	Tomato	plastid	87.84	87.65
PGSC0003DMT400037527	Potato	cytosol	87.84	87.65
KRH54115	Soybean	plastid	86.86	86.77
KRH63851	Soybean	plastid	86.75	86.66
Zm00001d024009_P001	Maize	plastid	86.64	86.64
GSMUA_Achr6P16470_001	Banana	plastid	81.98	86.19
KRH59753	Soybean	endoplasmic reticulum	85.78	85.96
PGSC0003DMT400036961	Potato	plastid	86.1	85.73
Solyc03g118340.2.1	Tomato	nucleus	85.99	85.53
KRH41069	Soybean	mitochondrion, plastid	84.8	84.98
AT5G50920.1	Thale cress	plastid	85.45	84.71
PGSC0003DMT400054236	Potato	plastid	83.5	84.51
Bra022751.1-P	Field mustard	plastid	85.23	84.5
Bra018030.1-P	Field mustard	mitochondrion	81.43	84.46
CDY45800	Canola	plastid	84.04	84.04
CDX68504	Canola	mitochondrion	83.39	82.76
Bra029922.1-P	Field mustard	mitochondrion	83.28	82.65
CDY05878	Canola	mitochondrion	83.6	82.62
CDX83052	Canola	mitochondrion	83.06	82.52
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	87.3	81.96
AT3G48870.3	Thale cress	cytosol, plastid	81.65	78.99
TraesCS4B01G082900.1	Wheat	mitochondrion	52.77	64.54
Zm00001d029672_P004	Maize	plastid	16.18	63.68
GSMUA_AchrUn_...	Banana	plastid	79.8	62.77
PGSC0003DMT400037525	Potato	plastid	16.29	59.06
VIT_16s0100g00180.t01	Wine grape	cytosol	4.34	58.82
VIT_07s0005g05810.t01	Wine grape	cytosol	4.34	58.82
Zm00001d039640_P001	Maize	cytoskeleton, cytosol, nucleus	8.69	53.33
Zm00001d036813_P001	Maize	cytosol	5.86	47.79
Zm00001d003847_P001	Maize	plastid	44.63	44.1
Zm00001d016664_P001	Maize	plastid	44.41	43.19
Zm00001d047302_P002	Maize	plastid	42.45	40.14
Zm00001d015520_P001	Maize	mitochondrion	42.89	39.98
Zm00001d029557_P001	Maize	plastid	42.45	39.98
Zm00001d038806_P001	Maize	nucleus	38.11	38.49
Zm00001d008786_P001	Maize	plastid	4.78	24.72
Zm00001d039497_P002	Maize	nucleus	0.54	6.58

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	Gene3D:4.10.860.10	UniProt:A0A1D6EC46
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	ProteinID:ONM17897.1	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI000843D722	InterPro:UVR_dom	EnsemblPlantsGene:Zm00001d003894	EnsemblPlants:Zm00001d003894_P004
EnsemblPlants:Zm00001d003894_T004	SEG:seg	:	:	:	:

Description

Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein

Coordinates

chr2:+:65545285..65551814

Molecular Weight (calculated)

102105.0 Da

IEP (calculated)

6.556

GRAVY (calculated)

-0.325

Length

921 amino acids

Sequence
(BLAST)

001: MEGTLVQSAV VPTVYRSSSG RFRVRARART NATMVRNMPT RTLTLGGFQG LRQTNFLDTR SVIKRDFGSI VASQIARPRG SASRGVVRAM FERFTEKAIK
101: VIMLAQEEAR RLGHNFVGTE QILLGLIGEG TGIAAKVLKS MGINLKDARV EVEKIIGRGS GFVAVEIPFT PRAKRVLELS LEEARQLGHN YVGSEHLLLG
201: LLREGEGVAA RVLESLGADP NNIRTQVIRM VGESTEAVGA GVGGGSSGQK MPTLEEYGTN LTKLAEEGKL DPVVGRQDQI ERVTQILGRR TKNNPCLIGE
301: PGVGKTAIAE GLAQRIANGD VPETIEGKKV ITLDMGLLVA GTKYRGEFEE RLKKLMEEIK QNEDIILFID EVHTLIGAGA AEGAIDAANI LKPALARGEL
401: QCIGATTLDE YRKHIEKDPA LERRFQPVKV PEPTVDETIQ ILRGLRERYE LHHKLRYTDD ALIAAAQLSY QYISDRFLPD KAIDLIDEAG SRVRLRHAQL
501: PDEAKELDKE LRQITKQKNE AVRGQDFEKA GELRDREMEL KAQITAIIDK SKEMIKAETE SGEVGPLVTE ADIQHIVSSW TGIPVEKVSS DESDRLLKME
601: ETLHTRIIGQ DEAVKAISRA IRRARVGLKN PNRPIASFIF SGPTGVGKSE LAKALAAYYF GSEEAMIRLD MSEFMERHTV SKLIGSPPGY VGYTEGGQLT
701: EAVRRRPYTV VLFDEIEKAH PDVFNMMLQI LEDGRLTDSK GRTVDFKNTL LIMTSNVGSS VIEKGGRKIG FDLDYDEKDT SYNRIKSLVT EELKQYFRPE
801: FLNRLDEMIV FRQLTKLEVK EIADIMLKEV FDRLKAKDIN LQVTEKFRDR VVDEGYNPSY GARPLRRAIM RLLEDSLAEK MLAGEVKEGD SAIVDVDSDG
901: KVIVLNGGSG VAEPLEPALS T

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.