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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX84888 Canola cytosol 88.27 99.15
GSMUA_Achr6P08050_001 Banana cytosol 13.46 98.43
Bra022751.1-P Field mustard plastid 97.2 97.2
CDY45800 Canola plastid 96.12 96.96
GSMUA_Achr6P08040_001 Banana cytosol 62.54 90.22
Os04t0397100-01 Rice plastid 38.86 89.58
Solyc12g042060.1.1 Tomato plastid 87.94 88.52
PGSC0003DMT400037527 Potato cytosol 87.84 88.41
KRH54115 Soybean plastid 87.3 87.96
KRH63851 Soybean plastid 87.19 87.85
KRH59753 Soybean endoplasmic reticulum 86.65 87.6
GSMUA_Achr3P18630_001 Banana plastid 84.82 87.26
KRH41069 Soybean mitochondrion, plastid 86.01 86.94
PGSC0003DMT400036961 Potato plastid 86.54 86.92
Solyc03g118340.2.1 Tomato nucleus 86.44 86.72
PGSC0003DMT400054236 Potato plastid 84.39 86.15
TraesCS6A01G195200.1 Wheat plastid 84.5 85.7
TraesCS6B01G233800.1 Wheat plastid 84.39 85.59
TraesCS6D01G183600.2 Wheat cytosol, plastid 84.39 85.59
Zm00001d003894_P004 Maize plastid 84.71 85.45
Zm00001d025273_P019 Maize plastid 84.61 85.34
EES12052 Sorghum plastid 84.61 85.34
HORVU2Hr1G071080.3 Barley plastid 84.07 85.17
TraesCS2B01G304200.1 Wheat golgi 83.96 85.06
TraesCS2D01G285800.1 Wheat plastid 83.96 85.06
TraesCS2A01G287300.2 Wheat plastid 81.59 84.69
GSMUA_Achr6P16470_001 Banana plastid 79.76 84.59
Os12t0230100-01 Rice plastid 83.32 84.22
KXG23307 Sorghum plastid 83.42 84.15
Zm00001d024009_P001 Maize plastid 83.42 84.15
AT3G48870.3 Thale cress cytosol, plastid 85.9 83.82
TraesCS5A01G118900.1 Wheat unclear 82.99 83.8
TraesCS5D01G118700.1 Wheat plastid 82.88 83.7
TraesCS5B01G112500.1 Wheat plastid 82.78 83.59
VIT_17s0000g00340.t01 Wine grape mitochondrion, plastid 87.73 83.08
GSMUA_Achr8P09160_001 Banana plastid 82.24 82.68
HORVU5Hr1G031470.6 Barley endoplasmic reticulum, golgi, mitochondrion, plastid 82.24 78.52
AT3G45450.1 Thale cress cytosol 24.0 65.4
TraesCS4B01G082900.1 Wheat mitochondrion 51.67 63.74
GSMUA_AchrUn_... Banana plastid 78.47 62.25
AT5G51070.1 Thale cress plastid 43.6 42.86
AT2G25140.1 Thale cress mitochondrion 41.66 40.15
AT4G14670.1 Thale cress cytosol 26.59 39.65
AT5G15450.1 Thale cress plastid 40.9 39.26
AT1G74310.1 Thale cress nucleus 38.32 39.08
AT4G14675.1 Thale cress cytosol 3.44 20.13
Protein Annotations
Gene3D:1.10.1780.10Gene3D:1.10.8.60MapMan:19.4.2.9.4Gene3D:3.40.50.300PDB:5GUIEntrezGene:835165
UniProt:A0A178UE63InterPro:AAA+_ATPaseProteinID:AED96011.1EMBL:AF022909EMBL:AK227173ArrayExpress:AT5G50920
EnsemblPlantsGene:AT5G50920RefSeq:AT5G50920TAIR:AT5G50920RefSeq:AT5G50920-TAIR-GEnsemblPlants:AT5G50920.1TAIR:AT5G50920.1
InterPro:ATPase_AAA_coreEMBL:AY102125Unigene:At.24774ProteinID:BAB08738.1Symbol:CLPCInterPro:ClpA/B
InterPro:ClpA/B_CS1InterPro:ClpA/B_CS2InterPro:Clp_ATPase_CInterPro:Clp_NInterPro:Clp_N_dom_sfncoils:Coil
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004176GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0006508GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0008233
GO:GO:0009058GO:GO:0009507GO:GO:0009532GO:GO:0009535GO:GO:0009536GO:GO:0009570
GO:GO:0009579GO:GO:0009658GO:GO:0009706GO:GO:0009719GO:GO:0009735GO:GO:0009941
GO:GO:0009987GO:GO:0010380GO:GO:0015031GO:GO:0016020GO:GO:0016043GO:GO:0016787
GO:GO:0019538GO:GO:0030312GO:GO:0031897GO:GO:0031969GO:GO:0045036GO:GO:0045037
InterPro:IPR001943InterPro:IPR036628RefSeq:NP_568746.1ProteinID:OAO92068.1InterPro:P-loop_NTPasePFAM:PF00004
PFAM:PF02151PFAM:PF02861PFAM:PF07724PFAM:PF10431PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001170
PO:PO:0001185PO:PO:0004507PO:PO:0006339PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007131PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009001PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025281PRINTS:PR00300ScanProsite:PS00870ScanProsite:PS00871PFscan:PS50151
PANTHER:PTHR43572PANTHER:PTHR43572:SF19UniProt:Q9FI56SMART:SM00382SMART:SM01086SUPFAM:SSF52540
SUPFAM:SSF81923UniParc:UPI00000A54A7InterPro:UVR_domSEG:seg::
Description
CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
Coordinates
chr5:-:20715453..20720681
Molecular Weight (calculated)
103459.0 Da
IEP (calculated)
6.733
GRAVY (calculated)
-0.395
Length
929 amino acids
Sequence
(BLAST)
001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.