Factsheet for TraesCS5B01G112500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G50920.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G50920.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G118900.1	Wheat	unclear	99.46	99.46
TraesCS5D01G118700.1	Wheat	plastid	99.24	99.24
GSMUA_Achr6P08050_001	Banana	cytosol	13.37	96.85
Os12t0230100-01	Rice	plastid	93.37	93.47
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	97.83	92.5
KXG23307	Sorghum	plastid	92.17	92.07
Zm00001d024009_P001	Maize	plastid	92.07	91.97
CDX84888	Canola	cytosol	80.98	90.08
GSMUA_Achr6P08040_001	Banana	cytosol	62.07	88.66
CDY64710	Canola	cytosol	78.7	88.08
TraesCS2B01G304200.1	Wheat	golgi	84.78	85.06
TraesCS6B01G233800.1	Wheat	plastid	84.35	84.72
GSMUA_Achr3P18630_001	Banana	plastid	82.83	84.39
PGSC0003DMT400037527	Potato	cytosol	84.57	84.29
Solyc12g042060.1.1	Tomato	plastid	84.46	84.18
PGSC0003DMT400036961	Potato	plastid	84.35	83.89
Solyc03g118340.2.1	Tomato	nucleus	84.35	83.8
KRH54115	Soybean	plastid	83.59	83.41
KRH59753	Soybean	endoplasmic reticulum	83.26	83.35
KRH63851	Soybean	plastid	83.48	83.3
GSMUA_Achr6P16470_001	Banana	plastid	78.91	82.88
KRH41069	Soybean	mitochondrion, plastid	82.72	82.81
AT5G50920.1	Thale cress	plastid	83.59	82.78
Bra022751.1-P	Field mustard	plastid	83.59	82.78
PGSC0003DMT400054236	Potato	plastid	81.52	82.42
CDY45800	Canola	plastid	82.5	82.41
Bra018030.1-P	Field mustard	mitochondrion	79.35	82.21
Bra029922.1-P	Field mustard	mitochondrion	81.74	81.03
CDX68504	Canola	mitochondrion	81.74	81.03
CDX83052	Canola	mitochondrion	81.63	81.01
CDY05878	Canola	mitochondrion	81.74	80.69
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	84.57	79.31
AT3G48870.3	Thale cress	cytosol, plastid	80.11	77.42
TraesCS4B01G083000.1	Wheat	plastid	72.83	71.28
TraesCS4B01G082900.1	Wheat	mitochondrion	52.61	64.28
GSMUA_AchrUn_...	Banana	plastid	76.63	60.2
PGSC0003DMT400037525	Potato	plastid	16.3	59.06
VIT_16s0100g00180.t01	Wine grape	cytosol	4.35	58.82
VIT_07s0005g05810.t01	Wine grape	cytosol	4.35	58.82
TraesCS5B01G554000.1	Wheat	cytosol	28.59	45.74
TraesCS4B01G046000.1	Wheat	cytosol	32.07	44.49
TraesCS5B01G422900.1	Wheat	cytosol	30.0	44.37
TraesCS7B01G357500.1	Wheat	cytosol	31.09	43.73
TraesCS5B01G321800.1	Wheat	plastid	44.02	43.69
TraesCS2B01G158300.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	32.61	43.48
TraesCS7B01G357600.2	Wheat	cytosol	31.63	43.18
TraesCS5B01G537100.1	Wheat	mitochondrion	31.63	43.11
TraesCS5B01G422800.1	Wheat	cytosol	31.3	43.05
TraesCS2B01G307500.1	Wheat	plastid	43.8	42.69
TraesCS7B01G357400.1	Wheat	cytosol	30.11	41.53
TraesCS5B01G423000.1	Wheat	cytosol	30.54	40.78
TraesCS6B01G174500.1	Wheat	mitochondrion	43.59	40.46
TraesCS1B01G315600.1	Wheat	cytosol	32.28	40.46
TraesCS4B01G380800.1	Wheat	plastid	42.07	39.69
TraesCS5B01G070000.1	Wheat	mitochondrion	20.0	38.82
TraesCS1B01G352400.1	Wheat	cytosol, golgi	37.93	38.06
TraesCS4B01G393100.1	Wheat	cytosol	37.28	37.98
TraesCS3B01G308100.1	Wheat	cytosol	37.61	37.9
TraesCS4B01G090300.1	Wheat	mitochondrion	31.3	37.07
TraesCS6B01G278000.1	Wheat	cytosol	32.83	36.78

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382
SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	EnsemblPlantsGene:TraesCS5B01G112500	EnsemblPlants:TraesCS5B01G112500.1	InterPro:UVR_dom
TIGR:cd00009	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:176214393..176240089

Molecular Weight (calculated)

101864.0 Da

IEP (calculated)

6.857

GRAVY (calculated)

-0.317

Length

920 amino acids

Sequence
(BLAST)

001: MAGTLVLPVA LETTFAGRTG GRHCKSHGTR STPSMLAMSL NRPVRMAAFV GLRSVHSFSA MRSSNFRSTV ASYRFSRRGR RASFVTRAMF ERFTEKAIKV
101: IMLAQEEARR LGHNFVGTEQ VLLGLVGEGT GIAAKVLKSM GINLKDARVE VEKIIGRGNG FVAVEIPFTP RAKRVLELSL EEARQLGHNY IGSEHLLLGL
201: LREGEGVAAR VLESLGADPS NIRTQVVRMI GETTEAVGAG VGGGNSGNKM PTLEEYGTNL TKLAEEGKLD PVVGREPQIE RVVQILGRRT KNNPCLIGEP
301: GVGKTAIAEG LAQRISSGDV PETIEGKKVI TLDMGLLVAG TKYRGEFEER LKKLMEEIKQ SDEIILFIDE VHTLIGAGAA EGAIDAANIL KPALARGELQ
401: CIGATTLDEY RKHVEKDPAL ERRFQPVKVP EPSVDETIEI LRGLRERYEI HHKLRYTDDS LIAAAKLSYQ YISDRFLPDK AIDLIDEAGS RVRLRHAQVP
501: EEARELDKEL KQITKDKNEA VRGQDFEKAG ELRDREMELK AQITALIDKS KEMNKAETES GETGPMVHES DIQHIVSSWT GIPVEKVSTD ESDKLLKMEE
601: TLHKRVIGQD EAVKAISRSV RRARVGLKSP NRPIASFIFA GPTGVGKSEL AKTLASYYFG SEEAMIRLDM SEFMERHTVS KLIGSPPGYV GYTEGGQLTE
701: AVRRRPYSVV LFDEIEKAHP DVFNMMLQIL EDGRLTDSKG RTVDFKNTLL IMTSNVGSSV IEKGGRKIGF DLDSDEKDSS YGRIKSLVIE EMKQYFRPEF
801: LNRLDEMIVF RQLTKLEVKE IADIMLQEVF ARLKTKDINL QVTEKFKERV VDEGYNPSYG ARPLRRAIMR LLEDSLAEKI LGGEVKEGDS VIVDVDPEGK
901: VIVLNGESGL PELPAPAVAV

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.