Factsheet for TraesCS2B01G307500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G289100.1	Wheat	plastid	98.73	98.52
TraesCS2A01G291100.1	Wheat	plastid	98.52	98.31
HORVU2Hr1G072020.5	Barley	plastid	85.28	96.52
OQU81478	Sorghum	cytosol	78.18	86.72
Zm00001d003847_P001	Maize	plastid	84.22	85.3
TraesCS5B01G321800.1	Wheat	plastid	73.52	74.87
GSMUA_Achr6P23780_001	Banana	cytosol	62.82	70.18
CDY38846	Canola	plastid	60.49	61.33
VIT_19s0014g00020.t01	Wine grape	plastid	60.91	60.78
CDY32646	Canola	plastid	60.06	60.71
Bra029193.1-P	Field mustard	plastid	60.49	60.55
CDX71686	Canola	plastid	59.64	60.41
AT5G51070.1	Thale cress	plastid	60.38	60.32
GSMUA_Achr10P...	Banana	plastid	62.71	59.74
Solyc03g117950.2.1	Tomato	nucleus	59.85	58.61
PGSC0003DMT400036893	Potato	plastid	59.85	58.55
KRH63903	Soybean	plastid	58.47	58.35
KRH54048	Soybean	plastid	58.05	57.68
TraesCS4B01G082900.1	Wheat	mitochondrion	36.12	45.29
TraesCS5B01G554000.1	Wheat	cytosol	27.12	44.52
TraesCS2B01G304200.1	Wheat	golgi	43.11	44.38
TraesCS6B01G233800.1	Wheat	plastid	43.01	44.32
TraesCS5B01G112500.1	Wheat	plastid	42.69	43.8
TraesCS4B01G046000.1	Wheat	cytosol	29.87	42.53
TraesCS4B01G083000.1	Wheat	plastid	41.42	41.6
TraesCS7B01G357500.1	Wheat	cytosol	28.39	40.98
TraesCS5B01G422900.1	Wheat	cytosol	26.59	40.35
TraesCS5B01G537100.1	Wheat	mitochondrion	28.81	40.3
TraesCS5B01G422800.1	Wheat	cytosol	28.5	40.21
TraesCS7B01G357600.2	Wheat	cytosol	28.6	40.06
TraesCS2B01G158300.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	29.03	39.71
TraesCS7B01G357400.1	Wheat	cytosol	27.86	39.43
TraesCS1B01G315600.1	Wheat	cytosol	29.87	38.42
TraesCS5B01G423000.1	Wheat	cytosol	27.86	38.17
TraesCS1B01G352400.1	Wheat	cytosol, golgi	35.81	36.86
TraesCS5B01G070000.1	Wheat	mitochondrion	18.43	36.71
TraesCS4B01G380800.1	Wheat	plastid	37.82	36.62
TraesCS3B01G308100.1	Wheat	cytosol	34.96	36.14
TraesCS4B01G090300.1	Wheat	mitochondrion	29.45	35.78
TraesCS4B01G393100.1	Wheat	cytosol	34.0	35.55
TraesCS6B01G174500.1	Wheat	mitochondrion	37.18	35.42
TraesCS6B01G278000.1	Wheat	cytosol	29.34	33.74

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF17
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	EnsemblPlantsGene:TraesCS2B01G307500	EnsemblPlants:TraesCS2B01G307500.1
TIGR:cd00009	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:440210046..440214763

Molecular Weight (calculated)

102501.0 Da

IEP (calculated)

8.501

GRAVY (calculated)

-0.144

Length

944 amino acids

Sequence
(BLAST)

001: MEACCCSSSS APPASILATG AGLRRRFSPA TAAASGGRVV ALALAPPLRA SSAALLVAPP RRGQQRRGAA GLVVRAVFER FTERAVKAVV LSQREARGMG
101: DEVVAPHHLL LGLVAEDRSA AGFLASGVRI ERAREACRAA VGKGGPAQAA TGLATDVPFS GASKRVFVAA VEFSRNMGCN FISPDHIALG LFDLDDPTTN
201: SILKSLGVVP TQLAKQALTR VKGELAKDGR EPLGLSSFKL RDKSTAGNGR TAIAKYSNKK KEKSALAQFC IDLTMRASGG FIDPVIGRTK EIERVVQIIC
301: RRTKNNPILL GEAGVGKTAI AEGLALKIAN GDVPIFLVGK RILSLDVALL MAGAKERGEL EARVTSLIRE VRKADDVILF IDEVHTLIGS GIAGRGNKGA
401: GLDIANLLKP ALARGELQCI ASTTLDEHRL HFEKDKALAR RFQPVYVNEP SQEDAVKILL GLREKYETYH KCKYTLEGIN AAVYLSVRYI PDRHLPDKAI
501: DLIDEAGSRA RMESFKKKKE EQCSIILKSP DEYWQEIRAV QAMHEVALTN RLKYSLNEND QENEVNVEVL DDSKTSPTAT PSASADEPSV VGLEEIARVT
601: SLWSGIPVQQ LTADERKLLV GLDDELRKRV IGQDDAVVAI SRAVKRSRTG MSDPDRPIAT LLFCGPTGVG KTELTKALAS TYFGSESAMV RLDMSEYMER
701: HAVSKLIGSP PGYMGFGEGG TLTEAVRRKP FTVVLFDEIE KAHPDIFNIL LQVFEDGHLT DSQGRRVSFK NTLIVMTSNV GSTSISKGTM SMGFQTQNDT
801: EENTYAVMKS LVMEELKAFF RPELLNRMDE VVVFRPLEKT EMLAILNIIL EEVKGRLLAL GIGLVVSDAM KNMVSQQGYD KSYGARPLRR AVTQLVEDVI
901: SEAILSGQYK PGDTIMMDTD DKGKPCLSRL NDQTVQVSDP TPMH

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.