Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 10
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g075780.1.1 | |
| Solyc11g073060.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51070.1 | Solyc06g075780.1.1 | AT3G46090.1 | 17259181 |
| AT5G51070.1 | Solyc11g073060.1.1 | AT3G46090.1 | 17259181 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036893 | Potato | plastid | 97.72 | 97.62 |
| VIT_19s0014g00020.t01 | Wine grape | plastid | 69.09 | 70.4 |
| GSMUA_Achr6P23780_001 | Banana | cytosol | 60.06 | 68.52 |
| AT5G51070.1 | Thale cress | plastid | 67.01 | 68.36 |
| CDY38846 | Canola | plastid | 65.66 | 67.99 |
| Bra029193.1-P | Field mustard | plastid | 66.18 | 67.66 |
| CDY32646 | Canola | plastid | 65.35 | 67.45 |
| CDX71686 | Canola | plastid | 64.42 | 66.63 |
| OQU81478 | Sorghum | cytosol | 57.16 | 64.75 |
| Os02t0526400-01 | Rice | cytosol, plasma membrane | 53.84 | 63.14 |
| HORVU5Hr1G081860.1 | Barley | cytosol | 49.9 | 62.96 |
| HORVU2Hr1G072020.5 | Barley | plastid | 53.94 | 62.35 |
| Zm00001d003847_P001 | Maize | plastid | 60.17 | 62.23 |
| KRH63903 | Soybean | plastid | 60.48 | 61.63 |
| KRH54048 | Soybean | plastid | 60.68 | 61.58 |
| TraesCS2B01G307500.1 | Wheat | plastid | 58.61 | 59.85 |
| TraesCS2D01G289100.1 | Wheat | plastid | 58.71 | 59.83 |
| TraesCS2A01G291100.1 | Wheat | plastid | 58.71 | 59.83 |
| Zm00001d016664_P001 | Maize | plastid | 58.71 | 59.77 |
| TraesCS5B01G321800.1 | Wheat | plastid | 57.16 | 59.44 |
| TraesCS5A01G321300.1 | Wheat | plastid | 56.95 | 59.29 |
| TraesCS5D01G328100.1 | Wheat | plastid | 56.95 | 59.03 |
| EES05165 | Sorghum | plastid | 58.4 | 58.83 |
| GSMUA_Achr10P... | Banana | plastid | 57.88 | 56.31 |
| Solyc06g011380.2.1 | Tomato | cytosol, plastid | 10.17 | 47.8 |
| Solyc12g042060.1.1 | Tomato | plastid | 42.12 | 43.99 |
| Solyc03g118340.2.1 | Tomato | nucleus | 41.7 | 43.41 |
| Solyc06g082560.1.1 | Tomato | plastid | 33.4 | 37.7 |
| Solyc03g115230.2.1 | Tomato | plastid | 34.34 | 36.33 |
| Solyc02g088610.2.1 | Tomato | plastid | 36.41 | 35.82 |
| Solyc06g011400.2.1 | Tomato | nucleus | 19.29 | 35.16 |
| Solyc06g011370.2.1 | Tomato | plastid | 7.26 | 23.49 |
Protein Annotations
| Gene3D:1.10.1780.10 | Gene3D:1.10.8.60 | MapMan:19.4.2.9.5 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_core |
| InterPro:ClpA/B | InterPro:ClpA/B_CS1 | InterPro:ClpA/B_CS2 | InterPro:Clp_ATPase_C | InterPro:Clp_N | InterPro:Clp_N_dom_sf |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0034605 | GO:GO:1901002 |
| GO:GO:1902584 | InterPro:IPR036628 | UniProt:K4BLU6 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02861 |
| PFAM:PF07724 | PFAM:PF10431 | PRINTS:PR00300 | ScanProsite:PS00870 | ScanProsite:PS00871 | PANTHER:PTHR43572 |
| PANTHER:PTHR43572:SF20 | SMART:SM00382 | SMART:SM01086 | SUPFAM:SSF52540 | SUPFAM:SSF81923 | EnsemblPlantsGene:Solyc03g117950.2 |
| EnsemblPlants:Solyc03g117950.2.1 | UniParc:UPI0002767A4A | SEG:seg | : | : | : |
Description
Chaperone protein ClpD, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G51070) UniProtKB/Swiss-Prot;Acc:P42762]
Coordinates
chr3:-:66924087..66930728
Molecular Weight (calculated)
105720.0 Da
IEP (calculated)
7.454
GRAVY (calculated)
-0.198
Length
964 amino acids
Sequence
(BLAST)
(BLAST)
001: MELSCSSPLS VNSTISFNRY VSVYPHRRCQ SVLSLFPYYP SSSSHVATTA TASAPCSTSS SSSTLFGISL SHRPSSSVHR KIKRSMYIVS GVFERFTERS
101: IKAVMFSQKE AKALGKDMVS TQHLLLGLIA EDRSPGGFLG SRITIDKARE AVRSIWLGDS EDDTTKLGSQ DSSSATSATD VAFSSSTKRV FEAAVEYSRT
201: MGYNYIAPEH IAIGLFTVDD GSAGRVLKRL GANVNRLAAE AVSRLQGELA KDGRDPISFK RSREKSFPGK ITIDRSAEKA KEKNALEQFC VDLTARASEG
301: LIDPVIGRET EVQRMIEILC RRTKNNPILL GQAGVGKTAI AEGLAINIAE GNIPAFLMKK RVMSLDIGLL ISGAKERGEL EARVTTLIKE VKESGHIILF
401: IDEVHTLVGA GTVGRGNKGS GLDIANLLKP TLGRGELQCI ASTTMDEFRL HIEKDKAFAR RFQPILVNEP SQADAVQILL GLREKYESHH KCRYSLEAIN
501: AAVELSSRYI PDRYLPDKAI DLIDEAGSKS RMQAHKRRKE QQISVLSQSP SDYWQEIRAV QTMHEVILAS KLTENADASR LDDDSELHLQ PASSSTSDQH
601: ELPLVGPEDI AAVASLWTGI PLKQLTVDER MLLVGLDEQL KKRVVGQDEA VTSICRAVKR SRTGLKHPNR PISAMLFCGP TGVGKSELAK ALAASYFGSE
701: SAMLRLDMSE YMERHTVSKL IGSPPGYVGY GEGGTLTEAI RRKPFTVVLL DEIEKAHPDI FNILLQLFED GHLTDSQGRR VSFKNALIVM TSNVGSTAIV
801: KGRQNTIGFL LAEDESAASY AGMKAIVMEE LKTYFRPELL NRIDEVVVFR PLEKPQMLEI LNLMLQEVRA RLVSLGISLE VSEAVMDLIC QQGFDRNYGA
901: RPLRRAVTQM VEDLLCESVL SGDFKPGDVA VIHLDESGNP VVVNQSSQSI QLSDTNGNPV VTNR
101: IKAVMFSQKE AKALGKDMVS TQHLLLGLIA EDRSPGGFLG SRITIDKARE AVRSIWLGDS EDDTTKLGSQ DSSSATSATD VAFSSSTKRV FEAAVEYSRT
201: MGYNYIAPEH IAIGLFTVDD GSAGRVLKRL GANVNRLAAE AVSRLQGELA KDGRDPISFK RSREKSFPGK ITIDRSAEKA KEKNALEQFC VDLTARASEG
301: LIDPVIGRET EVQRMIEILC RRTKNNPILL GQAGVGKTAI AEGLAINIAE GNIPAFLMKK RVMSLDIGLL ISGAKERGEL EARVTTLIKE VKESGHIILF
401: IDEVHTLVGA GTVGRGNKGS GLDIANLLKP TLGRGELQCI ASTTMDEFRL HIEKDKAFAR RFQPILVNEP SQADAVQILL GLREKYESHH KCRYSLEAIN
501: AAVELSSRYI PDRYLPDKAI DLIDEAGSKS RMQAHKRRKE QQISVLSQSP SDYWQEIRAV QTMHEVILAS KLTENADASR LDDDSELHLQ PASSSTSDQH
601: ELPLVGPEDI AAVASLWTGI PLKQLTVDER MLLVGLDEQL KKRVVGQDEA VTSICRAVKR SRTGLKHPNR PISAMLFCGP TGVGKSELAK ALAASYFGSE
701: SAMLRLDMSE YMERHTVSKL IGSPPGYVGY GEGGTLTEAI RRKPFTVVLL DEIEKAHPDI FNILLQLFED GHLTDSQGRR VSFKNALIVM TSNVGSTAIV
801: KGRQNTIGFL LAEDESAASY AGMKAIVMEE LKTYFRPELL NRIDEVVVFR PLEKPQMLEI LNLMLQEVRA RLVSLGISLE VSEAVMDLIC QQGFDRNYGA
901: RPLRRAVTQM VEDLLCESVL SGDFKPGDVA VIHLDESGNP VVVNQSSQSI QLSDTNGNPV VTNR
001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA
Arabidopsis Description
CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.