Factsheet for Solyc06g011400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g088610.2.1	Tomato	plastid	68.81	37.14
Solyc06g082560.1.1	Tomato	plastid	41.78	25.88
Solyc03g115230.2.1	Tomato	plastid	43.1	25.03
Solyc03g118340.2.1	Tomato	nucleus	38.37	21.92
Solyc12g042060.1.1	Tomato	plastid	38.19	21.89
Solyc03g117950.2.1	Tomato	nucleus	35.16	19.29
Solyc06g011380.2.1	Tomato	cytosol, plastid	2.65	6.83
Solyc06g011370.2.1	Tomato	plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:ClpA/B
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	UniProt:K4C467	InterPro:P-loop_NTPase	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc06g011400.2	EnsemblPlants:Solyc06g011400.2.1	UniParc:UPI0002767273	:	:	:

Description

No Description!

Coordinates

chr6:+:6794068..6801172

Molecular Weight (calculated)

60667.0 Da

IEP (calculated)

5.201

GRAVY (calculated)

-0.487

Length

529 amino acids

Sequence
(BLAST)

001: MPHLNVFIAS SGLMDQDSKL LVQYFKYTID LVDEAAAKLK MEITSKPTEL DEIDRTVMKL EMEKLSLKND TDKASKERLN KLESDLNSFK QNQKELNEQW
101: EREKALMTRI RSIKEEIDRV NLEMEAAERD YDLNRAAELK YGTLITLQRQ LEEAERNLAD YQKSGSSMLR EEVTDLDIIE IVSKWTGIPL SNLQQSERDK
201: LVFLENELHK RVIGQDMAVK SVADSIRRSR AGLSDPNRPI ASFMFMGPTG VGKTELGKAL AAYLFNTENA LVRIDMSEYM EKHAVSRLVG APPGYVGYEE
301: GGQLTEVVRR RPYSVILFDE IEKAHHDVFN ILLQLLDDGR ITDSQGRTVS FTNTVVIMTS NIGSHYILET LRNTQDSQEA VYDLMKKQVI ELARQTFRPE
401: FMNRVDEYIV FQPLDLKQVS RIVELQMRRV KDRLKQKKID LHYTQEAISL LANMGFDPNY GARPVKRVIQ QMVENKVAMG VLRGDYVEED MIIVDADASP
501: QAKDLPPQKR LNIRKIENGS NMDAMVAND

Best Arabidopsis Sequence Match ( AT2G25140.1 )
(BLAST)

001: MALRRLSKSV SSAIKAQYTL SRPSPLLRSR SLSSSPHYTS IGRPTNSFIG KINNSSITHA TTTHGQLFPL SSPRRFCTTT AQVNQNEFTE MAWEGLINAF
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA

Arabidopsis Description

CLPB4Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.