Factsheet for Solyc02g088610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 16912911

plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

gfp PMID: 16912911 doi

JY Yang, Y Sun, AQ Sun, SY Yi, J Qin, MH Li, J Liu

College of Life Science, Shandong Normal University, Jinan, Shandong, 250014, PR China.

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g067340.2.1
Solyc08g067360.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	Solyc08g067340.2.1	AT2G25000.1	21798944
AT5G15450.1	Solyc08g067360.2.1	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003652	Potato	cytosol, plastid	98.16	98.26
VIT_14s0108g01500.t01	Wine grape	plastid	87.24	87.6
KRH01254	Soybean	nucleus, plastid	84.9	85.42
KRH44979	Soybean	nucleus, plastid	84.9	85.42
KRH18417	Soybean	nucleus	85.2	85.38
KRG93616	Soybean	nucleus	85.1	85.28
Bra023518.1-P	Field mustard	plastid	82.45	83.9
CDX85552	Canola	cytosol	21.73	83.53
CDX90991	Canola	plastid	82.04	83.4
GSMUA_Achr6P16670_001	Banana	plastid	79.39	83.03
Bra008698.1-P	Field mustard	plastid	82.35	82.94
CDX69524	Canola	plastid	82.35	82.94
CDY26423	Canola	plastid	82.04	82.63
CDX85551	Canola	plastid	55.0	82.42
AT5G15450.1	Thale cress	plastid	81.02	82.02
Zm00001d047302_P002	Maize	plastid	78.27	78.75
Zm00001d029557_P001	Maize	plastid	78.47	78.63
EER94678	Sorghum	plastid	78.67	78.43
TraesCSU01G131300.1	Wheat	plastid	77.65	78.37
Os03t0426900-01	Rice	plastid	78.16	78.32
TraesCS4B01G380800.1	Wheat	plastid	77.65	78.05
Solyc06g011380.2.1	Tomato	cytosol, plastid	16.33	78.05
TraesCS5A01G547300.1	Wheat	golgi, plastid	77.55	78.03
HORVU4Hr1G090440.2	Barley	plastid	77.96	72.21
Solyc06g011400.2.1	Tomato	nucleus	37.14	68.81
Solyc06g082560.1.1	Tomato	plastid	43.88	50.35
Solyc03g115230.2.1	Tomato	plastid	45.51	48.96
Solyc12g042060.1.1	Tomato	plastid	39.39	41.82
Solyc03g118340.2.1	Tomato	nucleus	39.08	41.36
Solyc06g011370.2.1	Tomato	plastid	11.73	38.59
Solyc03g117950.2.1	Tomato	nucleus	35.82	36.41

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N
InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009408	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987
GO:GO:0016485	GO:GO:0019538	GO:GO:0042026	InterPro:IPR036628	UniProt:K4BC16	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF144	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	EnsemblPlantsGene:Solyc02g088610.2	EnsemblPlants:Solyc02g088610.2.1	TIGRFAMs:TIGR03346	UniParc:UPI00027686DA	SEG:seg

Description

No Description!

Coordinates

chr2:-:50644342..50651409

Molecular Weight (calculated)

110384.0 Da

IEP (calculated)

6.492

GRAVY (calculated)

-0.474

Length

980 amino acids

Sequence
(BLAST)

001: MSTVTSFSGV QFCVPSSSSN SSNRVALFSS HSAPYLNFSG KSRVLGKCSS LKLKRKDVFF SRKTEKLSQG SRLTVRCDAS NGRITQQDFT EMAWQAIVAS
101: PEIAKENKHQ IVETEHLMKA LLEQKNGLAR RIFSKTGVDN TRLLEATDKF IRQQPKVIGE TAGSMLGREL EGLMQRAREY KKEYGDSFVS VEHLVLGFIQ
201: DKRFGKQLFN DFQISLKTLK TAIESIRGRQ NVIDQDPEGK YESLEKYGKD LTAMARAGKL DPVIGRDDEI RRCIQILSRR TKNNPVLIGE PGVGKTAISE
301: GLAQRIVQGD VPQALMNRRL ISLDMGALIA GAKYRGEFED RLKAVLKEVT ESEGQIILFI DEIHTVVGAG ATNGAMDAGN LLKPMLGRGE LRCIGATTLD
401: EYRKYIEKDP ALERRFQQVY VDQPTVEDTV SILRGLRERY ELHHGVRISD TALVDAAILS DRYISGRFLP DKAIDLVDEA AAKLKMEITS KPTALDEINR
501: AVLKLEMERL SLTNDTDKAS KDRLNRLETE LSLLKERQAE LTEQWEHEKS VMTRLQSIKE EIDRVNLEIQ QAEREYDLNR AAELKYGSLN TLQRQLEASE
601: KELSDYMKSG KSMLREEVTG NDVAEIVSKW TGIPVSKLQQ SEREKLLHLE EELHKRVVGQ DPAVRAVAEA IQRSRAGLSD PHRPIASFMF MGPTGVGKTE
701: LAKALANYLF NTEEALVRID MSEYMEKHAV SRLIGAPPGY VGYEEGGQLT EIVRRRPYAV ILFDEIEKAH SDVFNVFLQI LDDGRVTDSQ GRTVSFTNTV
801: IIMTSNVGSQ YILNTDDNDD DSSKEATYQT IKQRVMDAAR AVFRPEFMNR VDEYIVFQPL DRDQISSIVR LQLERVQQRL ADRKMKIQVS EAAIQLLGSL
901: GYDPNYGARP VKRVIQQNVE NELAKGILRG EFKDEDTILV DTEVSAFSNG QLPQQKLVFK RQESGSDSPA ENQEAFSQKL

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.