Factsheet for Solyc06g082560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063352	Potato	nucleus	93.21	87.28
Solyc03g115230.2.1	Tomato	plastid	92.74	86.94
KRH54672	Soybean	endoplasmic reticulum	70.84	80.35
VIT_17s0000g07190.t01	Wine grape	nucleus	84.07	78.81
KRH56831	Soybean	endoplasmic reticulum	81.97	76.84
Bra015922.1-P	Field mustard	nucleus	81.15	76.07
CDX85823	Canola	nucleus	78.45	75.88
CDX96531	Canola	cytosol	65.81	75.64
CDX73074	Canola	cytosol	65.57	75.37
TraesCS3A01G274400.1	Wheat	cytosol	80.33	75.14
Bra003807.1-P	Field mustard	nucleus	77.52	75.06
TraesCS3B01G308100.1	Wheat	cytosol	80.21	75.03
TraesCS3D01G273600.1	Wheat	cytosol	80.21	75.03
Zm00001d038806_P001	Maize	nucleus	79.98	74.89
GSMUA_Achr1P13710_001	Banana	cytosol	74.47	74.74
Os05t0519700-01	Rice	nucleus	79.63	74.56
EES19828	Sorghum	nucleus	79.63	74.48
CDX68190	Canola	nucleus	70.14	73.5
GSMUA_Achr3P16240_001	Banana	cytosol	73.3	73.47
TraesCS1B01G352400.1	Wheat	cytosol, golgi	78.57	73.17
TraesCS1D01G342100.1	Wheat	golgi	78.57	73.09
TraesCS1A01G340100.1	Wheat	nucleus	78.22	72.77
EES01468	Sorghum	nucleus	77.4	72.24
AT4G14670.1	Thale cress	cytosol	49.41	67.74
TraesCS4B01G393100.1	Wheat	cytosol	68.5	64.78
Solyc06g011380.2.1	Tomato	cytosol, plastid	15.11	62.93
HORVU7Hr1G008950.1	Barley	cytosol, plastid	13.82	49.58
Solyc02g088610.2.1	Tomato	plastid	50.35	43.88
Solyc06g011400.2.1	Tomato	nucleus	25.88	41.78
Solyc12g042060.1.1	Tomato	plastid	40.63	37.59
Solyc03g118340.2.1	Tomato	nucleus	40.4	37.26
AT4G14675.1	Thale cress	cytosol	6.91	37.11
Solyc03g117950.2.1	Tomato	nucleus	37.7	33.4
Solyc06g011370.2.1	Tomato	plastid	7.85	22.48

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	InterPro:IPR036628	UniProt:K4CAB3	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871
PANTHER:PTHR11638	PANTHER:PTHR11638:SF146	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923
EnsemblPlantsGene:Solyc06g082560.1	EnsemblPlants:Solyc06g082560.1.1	UniParc:UPI00027659C2	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:48340001..48342565

Molecular Weight (calculated)

95077.0 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.384

Length

854 amino acids

Sequence
(BLAST)

001: MMNNPENFTD KTNEAVGEAH ELAVSAGNAQ LTPLHIALVL LSDHSGIFWQ AIVNAAGIED TANGVQRVFN QAKKKIPSQL PPPDQVPPST SLNKVLLRAQ
101: SLQKSRGDSH LAVDLLILGL LEDSQIVHLL NDSGLSAAGV KSEVEKLRGK DGKDVESATT FQALNTYGRD LVEQAGKLDP VIGRDEEIRR VIRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVRGDVP SNLADVRVIA LDMGALIAGT KYRGEFEERL KDVLKEVEDA QGKVTLFIDE IHLVLGAGRI EGSMDAANLF
301: KPMLARGQLR CIGATTMEEY SKYVEKDAAF ERRFQQVYVA EPSIPDTISI LRGLKEKYEG HHGVKIQDRA LVIAAQLSSR YITGRHLPDK AIDLVDEASA
401: NVRVQLDSQP EEIDNLERKR IQLQVEHHAL EKEKDKASKA RLVEVRKELD DSRDKLQPLM MRYNKEKERI DELRRLKQKR DALTYALQDA ERRYDLARAA
501: DLRYGAIQDV EAAIANLESS TDESRMLTET VGPDQIAEVV SRWTGIPVSR LGQNEKEKLI GLADRLHQRV VGQDEAVKAV TEAVLRSRAG LGRPQQPTGS
601: FLFLGPTGVG KTELAKALAE QLFDDDKLMV RIDMSEYMEQ HSVARLIGAP PGYVGHEEGG QLTKAVRRRP YSVVLFDEVE KAHPTVFNAL LQVLDDGRLT
701: DGQGRTVDFT NTVIIMTSNL GAEYLLSGTR EMVMQDVRKQ FKPELLNRLD EVLVFDPLSH DQLRQVCRHQ LKDVAGRLAE RGIALGVTEA ALDVVLAQSY
801: DPVYGARPIR RWLEKKVVTE LSKMLVKEEI NENSTVYIDA RRGDKDLTYR VHGE

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.