Factsheet for TraesCS1D01G342100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G352400.1	Wheat	cytosol, golgi	99.13	99.24
HORVU1Hr1G076190.4	Barley	nucleus	99.02	99.24
TraesCS1A01G340100.1	Wheat	nucleus	98.58	98.58
Os05t0519700-01	Rice	nucleus	94.12	94.74
EES19828	Sorghum	nucleus	93.79	94.3
Zm00001d038806_P001	Maize	nucleus	93.03	93.64
TraesCS3D01G273600.1	Wheat	cytosol	91.29	91.79
GSMUA_Achr1P13710_001	Banana	cytosol	80.94	87.31
GSMUA_Achr3P16240_001	Banana	cytosol	79.52	85.68
CDX96531	Canola	cytosol	68.74	84.93
CDX73074	Canola	cytosol	68.63	84.79
VIT_17s0000g07190.t01	Wine grape	nucleus	83.77	84.41
KRH54672	Soybean	endoplasmic reticulum	69.17	84.33
Bra015922.1-P	Field mustard	nucleus	83.44	84.08
CDX85823	Canola	nucleus	80.39	83.58
AT1G74310.1	Thale cress	nucleus	82.68	83.31
KRH56831	Soybean	endoplasmic reticulum	82.46	83.1
Bra003807.1-P	Field mustard	nucleus	79.3	82.54
CDX68190	Canola	nucleus	73.09	82.33
Solyc03g115230.2.1	Tomato	plastid	80.61	81.23
PGSC0003DMT400063352	Potato	nucleus	80.17	80.7
Solyc06g082560.1.1	Tomato	plastid	73.09	78.57
AT4G14670.1	Thale cress	cytosol	46.41	68.38
TraesCS3D01G090400.1	Wheat	mitochondrion	36.82	56.9
TraesCS2D01G136900.1	Wheat	cytosol	31.7	55.75
TraesCS7D01G445400.1	Wheat	cytosol	34.31	55.46
TraesCS4D01G046000.1	Wheat	cytosol	39.98	55.35
TraesCS4D01G047000.1	Wheat	cytosol	39.98	55.02
TraesCS7D01G045200.1	Wheat	extracellular, mitochondrion	30.72	53.61
TraesCS5D01G429400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	38.89	53.52
TraesCS5D01G429500.1	Wheat	cytosol	39.0	53.51
TraesCS7D01G045500.1	Wheat	endoplasmic reticulum	36.06	53.22
TraesCS7D01G045400.1	Wheat	cytosol	28.54	53.14
TraesCS7D01G045700.1	Wheat	endoplasmic reticulum	35.73	52.73
TraesCS7D01G046200.1	Wheat	cytosol	29.63	52.11
TraesCS7D01G042900.1	Wheat	cytosol	36.49	52.1
TraesCS5D01G074000.1	Wheat	mitochondrion	39.0	51.66
TraesCS7D01G042800.1	Wheat	plastid	36.17	51.63
TraesCS5D01G429700.1	Wheat	endoplasmic reticulum, mitochondrion, plastid	38.45	51.31
TraesCS5D01G429600.1	Wheat	mitochondrion	38.45	51.31
TraesCS5D01G254700.2	Wheat	mitochondrion	23.2	50.24
TraesCS3D01G449000.1	Wheat	cytosol	15.14	50.0
TraesCS7D01G445500.1	Wheat	cytosol	18.85	48.19
AT4G14675.1	Thale cress	cytosol	8.06	46.54
TraesCS6D01G135600.1	Wheat	golgi	46.51	43.09
TraesCS2D01G285800.1	Wheat	plastid	37.8	37.84
TraesCS5D01G118700.1	Wheat	plastid	37.91	37.83
TraesCS6D01G183600.2	Wheat	cytosol, plastid	37.36	37.45
TraesCS4D01G081100.1	Wheat	plastid	37.91	37.02
TraesCS2D01G289100.1	Wheat	plastid	36.93	35.84
TraesCS5D01G328100.1	Wheat	plastid	36.17	35.7

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0019538	GO:GO:0034605
InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF146	SMART:SM00382
SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	EnsemblPlantsGene:TraesCS1D01G342100	EnsemblPlants:TraesCS1D01G342100.1	TIGR:cd00009
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:431826446..431829513

Molecular Weight (calculated)

101115.0 Da

IEP (calculated)

6.132

GRAVY (calculated)

-0.321

Length

918 amino acids

Sequence
(BLAST)

001: MNPDNFTHKT NEALVAAHEA ASEAGHAQIT PLHLAAALAA DKSGILRQAV AGASGGNASA GDSFERVLSG ALKKLPSQSP PPDSVPASTA LIKAIRRAQS
101: AQKKRGDSHL AVDQLLMGLL EDAQIADCLK EAGVSASRVR AELEKLRGGD NSRKVESASG DTNFQALKTY GRDLVEVAGK LDPVIGRDEE IRRVVRILSR
201: RTKNNPVLIG EPGVGKTAVV EGLAQRVVRG DVPSNLLDVR LVALDMGALV AGAKYRGEFE ERLKAVLKEV EEAEGKVILF IDEIHLVLGA GRTEGSMDAA
301: NLFKPMLARG QLRCIGATTL EEYRKYVEKD AAFERRFQQV YVAEPSVADT ISILRGLKEK YEGHHGVRIQ DRAIVVAAQL SARYIMGRHL PDKAIDLVDE
401: ACANVRVQLD SQPEEIDNLE RKRIQLEVEL HALEKEKDKA SKARLVEVRK ELDDLRDKLQ PLTMKYRKEK ERIDEIRKLK QRREELQFTL QEAERRMDLA
501: RVADLKYGAL QEIDAAIAKL EGETGENLML TETVGPEQIA EVVSRWTGIP VTRLGQNDKE RLVGMADRLH TRVVGQTEAV NAVAEAVLRS RAGLGRPQQP
601: TGSFLFLGPT GVGKTELAKA LAEQLFDDEN LLVRIDMSEY MEQHSVARLI GAPPGYVGHE EGGQLTEQVR RRPYSVILFD EVEKAHVAVF NTLLQVLDDG
701: RLTDGQGRTV DFRNTVIIMT SNLGAEHLLA GMVGKNSMKV ARDLVMQEVR RHFRPELLNR LDEIVVFDPL SHEQLRKVAR LQMKDVAVRL AERGVALAVT
801: DAALDVILSL AYDPVYGARP IRRWIEKRVV TQLSKMLIQE EIDENCTVYI DAANKDELAY RVDRSGGLVN AETGQRSDIL IQVPNGAVAN GGGGEAAKAV
901: KKMRVMEDGD EDGMDEDV

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.