Factsheet for TraesCS5D01G429600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	endoplasmic reticulum, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G422900.1	Wheat	cytosol	86.77	95.98
TraesCS5D01G429700.1	Wheat	endoplasmic reticulum, mitochondrion, plastid	92.3	92.3
HORVU5Hr1G102460.1	Barley	cytosol	19.62	87.66
TraesCS5D01G429500.1	Wheat	cytosol	82.56	84.9
TraesCS5D01G429400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	81.4	83.96
TraesCS3D01G090400.1	Wheat	mitochondrion	65.55	75.93
TraesCS7D01G445400.1	Wheat	cytosol	59.88	72.54
TraesCS2D01G136900.1	Wheat	cytosol	52.91	69.73
Os02t0537400-01	Rice	cytosol	44.19	69.41
TraesCS4D01G046000.1	Wheat	cytosol	66.13	68.63
TraesCS4D01G047000.1	Wheat	cytosol	66.13	68.22
TraesCS7D01G445500.1	Wheat	cytosol	34.88	66.85
TraesCS5D01G074000.1	Wheat	mitochondrion	66.13	65.66
TraesCS7D01G045700.1	Wheat	endoplasmic reticulum	55.96	61.9
TraesCS7D01G045500.1	Wheat	endoplasmic reticulum	55.81	61.74
TraesCS7D01G045400.1	Wheat	cytosol	44.19	61.66
TraesCS7D01G046200.1	Wheat	cytosol	46.37	61.11
TraesCS7D01G045200.1	Wheat	extracellular, mitochondrion	46.66	61.03
TraesCS3D01G449000.1	Wheat	cytosol	24.27	60.07
TraesCS7D01G042800.1	Wheat	plastid	54.94	58.79
TraesCS7D01G042900.1	Wheat	cytosol	54.8	58.63
OQU85081	Sorghum	mitochondrion, plastid	60.76	58.22
OQU81585	Sorghum	cytosol	54.36	57.89
KRH63249	Soybean	mitochondrion	16.13	57.22
TraesCS5D01G254700.2	Wheat	mitochondrion	35.17	57.08
TraesCS3D01G273600.1	Wheat	cytosol	51.6	38.88
TraesCS1D01G342100.1	Wheat	golgi	51.31	38.45
TraesCS6D01G183600.2	Wheat	cytosol, plastid	41.13	30.9
TraesCS2D01G285800.1	Wheat	plastid	41.13	30.86
TraesCS5D01G118700.1	Wheat	plastid	40.99	30.65
TraesCS6D01G135600.1	Wheat	golgi	42.15	29.26
TraesCS4D01G081100.1	Wheat	plastid	39.97	29.26
TraesCS5D01G328100.1	Wheat	plastid	37.65	27.85
TraesCS2D01G289100.1	Wheat	plastid	37.5	27.27

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:Clp_ATPase_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
PANTHER:PTHR11638	PANTHER:PTHR11638:SF100	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS5D01G429600	EnsemblPlants:TraesCS5D01G429600.1	TIGR:cd00009	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:+:487004729..487007696

Molecular Weight (calculated)

74751.0 Da

IEP (calculated)

8.755

GRAVY (calculated)

-0.032

Length

688 amino acids

Sequence
(BLAST)

001: MRGTYDPLLG TQVMQGALVQ RSVLHRLSLI WRGIEPFVFL GAAVGLGWAA WKYYDRRAAM RTYGRHMTGK TVGLVVGRDD EIDRVISILC RKTKNCAALV
101: GHAGVGKTAI AEGLAQRIAT GKVPAALAGA RVVEIDLGAM VAGTVMRGMF EERMKSVIKQ AENAAGKIIL FIDEMHVLPR AGDSHGNTDA SSLLKPALAR
201: GRIRCVGATT FDGYRNYIEK DPALERRFQK VHIEEPSTQA TIGILRGLKQ QFEQHHGLEI QDAALVAAAQ LAARYITGRQ FPDKAIDLID EACTATIKRA
301: ISANPTKGAA VVPNDVAQVV SQWTGIPVCT LEQEEKDKLI HLADRLHERV VGQDEAVNLV AETVLCSMAG LDHPGQPIGS FLFLGSTGVG KTELAKALAE
401: QLFGSEKMLV RFDMSEYVGS GSILRLIGAP PSHDGYDDGG QLTEKVRNRP YSVILFDEVE KADPSVLNIF IQLLDDGVLT DGKGRTVDFK NTIIIMTSNL
501: GAEHLTAGMA GEITMDAARD LLMKQVQKHF KPEFLNRLSE IVVFEPLLHD KLKEIVKIQM KSVIARVADK GISLFASDAA LDVILSDSYN PMYGARPIRR
601: WLEKNVMTKL SQMLVKGEAS EGSTITVGAT DNRSKLKYEV AKKAELSGVI CNTDSGGMAA VVSPIKRIAS QLARVTLKYT DGPALKTL

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.