Factsheet for TraesCS5D01G429400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 2
plastid 1
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G429500.1	Wheat	cytosol	94.0	93.72
HORVU5Hr1G102440.2	Barley	mitochondrion, plastid	90.7	90.57
TraesCS5D01G429700.1	Wheat	endoplasmic reticulum, mitochondrion, plastid	84.86	82.27
TraesCS5D01G429600.1	Wheat	mitochondrion	83.96	81.4
TraesCS3D01G090400.1	Wheat	mitochondrion	67.47	75.76
TraesCS7D01G445400.1	Wheat	cytosol	62.52	73.42
TraesCS4D01G046000.1	Wheat	cytosol	70.91	71.34
Os02t0537400-01	Rice	cytosol	46.03	70.09
TraesCS4D01G047000.1	Wheat	cytosol	70.02	70.02
TraesCS2D01G136900.1	Wheat	cytosol	54.57	69.73
TraesCS7D01G445500.1	Wheat	cytosol	37.18	69.08
TraesCS5D01G074000.1	Wheat	mitochondrion	68.82	66.23
TraesCS7D01G045400.1	Wheat	cytosol	46.48	62.88
TraesCS7D01G045700.1	Wheat	endoplasmic reticulum	57.87	62.06
TraesCS7D01G045500.1	Wheat	endoplasmic reticulum	57.72	61.9
TraesCS7D01G045200.1	Wheat	extracellular, mitochondrion	48.13	61.03
TraesCS7D01G046200.1	Wheat	cytosol	47.38	60.54
TraesCS3D01G449000.1	Wheat	cytosol	25.04	60.07
TraesCS7D01G042900.1	Wheat	cytosol	56.97	59.1
OQU85081	Sorghum	mitochondrion, plastid	63.57	59.05
TraesCS7D01G042800.1	Wheat	plastid	56.67	58.79
TraesCS5D01G254700.2	Wheat	mitochondrion	36.73	57.78
KRH63249	Soybean	mitochondrion	16.79	57.73
OQU81585	Sorghum	cytosol	54.87	56.66
TraesCS3D01G273600.1	Wheat	cytosol	53.97	39.43
TraesCS1D01G342100.1	Wheat	golgi	53.52	38.89
TraesCS2D01G285800.1	Wheat	plastid	42.88	31.19
TraesCS6D01G183600.2	Wheat	cytosol, plastid	42.73	31.11
TraesCS5D01G118700.1	Wheat	plastid	42.58	30.87
TraesCS6D01G135600.1	Wheat	golgi	44.83	30.17
TraesCS4D01G081100.1	Wheat	plastid	41.98	29.79
TraesCS5D01G328100.1	Wheat	plastid	39.58	28.39
TraesCS2D01G289100.1	Wheat	plastid	40.03	28.22

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:ClpA/B
InterPro:Clp_ATPase_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	PANTHER:PTHR11638	PANTHER:PTHR11638:SF100
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5D01G429400	EnsemblPlants:TraesCS5D01G429400.1	TIGR:cd00009
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:486896851..486899525

Molecular Weight (calculated)

72725.6 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.057

Length

667 amino acids

Sequence
(BLAST)

001: MGETYDPLLG TWVVQGTVFH QLGALLTRSQ SHMSSIWRRV EPLVFLGTAV SLGCAAWRYY DRKAALRTYG RHMTGKAVGP VVGRDDEIDR VISILCRKTK
101: NCAALVGPAG VGKTAIAEGL VQRIATGKVP AALAGARVVE VDLGAMVAGT RYRGMFEERM KSVINQAEKA GGKIILFIDE MHMLLGAGAG RGVTGASTML
201: KPALARGRIR CVGATTFDGY RNYIEKDPAL ERRFQKVHIE EPSTQATIGI LRGLKQQYEQ HHGLEIQDAA LVAAAQLAGR YITGRQFPDK AIDLIDEACS
301: ATIKRLMQID NQVEELNAKQ SRSANSVKGA TVVPNDVAQV VSLWTGIPVC TLEQEDKAKL IHLADGLHER VVGQDEAVNV VAEAVLRSRA GLNHPGQPIG
401: SFLFLGSTGV GKTELAKALA EELFASEKML VRFDMSEYVG SGSVLRLVGA PPSRQGCDDG GQLTEKVRSR PYSVILFDEV EKADPSVLNI FIQLLDDGVL
501: TDGKGRTVNF KNTIIILTSN LGAEHLMAGM AGEITMDVAR DLLMKQVQKH FKPELLNRLS EIVVFEPLLH DKLKEIVKIQ MKSVISRVAD KGISLFASDA
601: ALDVILSESY NPMYGARPIR RWLQKNVMIK LSQMLVKGEA SEGSTISIDA TDDKKKLKFE VVKKVEE

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.