Factsheet for TraesCS5D01G254700.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G045200.1	Wheat	extracellular, mitochondrion	77.36	62.36
TraesCS7D01G045700.1	Wheat	endoplasmic reticulum	90.57	61.74
TraesCS7D01G045500.1	Wheat	endoplasmic reticulum	90.33	61.58
TraesCS4A01G437000.1	Wheat	endoplasmic reticulum, mitochondrion	84.91	60.2
TraesCS7D01G445500.1	Wheat	cytosol	45.28	53.48
TraesCS7D01G045400.1	Wheat	cytosol	56.37	48.48
TraesCS7D01G042800.1	Wheat	plastid	65.8	43.39
TraesCS7D01G042900.1	Wheat	cytosol	65.09	42.92
TraesCS7D01G046200.1	Wheat	cytosol	48.82	39.66
TraesCS7D01G445400.1	Wheat	cytosol	51.42	38.38
TraesCS3D01G090400.1	Wheat	mitochondrion	53.07	37.88
TraesCS4D01G046000.1	Wheat	cytosol	58.96	37.71
TraesCS4D01G047000.1	Wheat	cytosol	59.2	37.63
TraesCS5D01G429500.1	Wheat	cytosol	58.49	37.07
TraesCS5D01G074000.1	Wheat	mitochondrion	60.14	36.8
TraesCS5D01G429400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	57.78	36.73
TraesCS2D01G136900.1	Wheat	cytosol	44.58	36.21
TraesCS5D01G429700.1	Wheat	endoplasmic reticulum, mitochondrion, plastid	57.08	35.17
TraesCS5D01G429600.1	Wheat	mitochondrion	57.08	35.17
OQU85081	Sorghum	mitochondrion, plastid	55.66	32.87
OQU81585	Sorghum	cytosol	45.75	30.03
Os02t0537400-01	Rice	cytosol	28.77	27.85
KRH63249	Soybean	mitochondrion	11.08	24.23
TraesCS3D01G273600.1	Wheat	cytosol	50.24	23.33
TraesCS1D01G342100.1	Wheat	golgi	50.24	23.2
TraesCS6D01G135600.1	Wheat	golgi	46.46	19.88
TraesCS6D01G183600.2	Wheat	cytosol, plastid	42.22	19.54
TraesCS2D01G285800.1	Wheat	plastid	41.98	19.41
TraesCS5D01G118700.1	Wheat	plastid	41.75	19.24
TraesCS5D01G328100.1	Wheat	plastid	41.75	19.03
TraesCS4D01G081100.1	Wheat	plastid	41.51	18.72
TraesCS2D01G289100.1	Wheat	plastid	41.51	18.6
TraesCS3D01G449000.1	Wheat	cytosol	3.54	5.4

Protein Annotations

EnsemblPlants:TraesCS5D01G254700.2	EnsemblPlantsGene:TraesCS5D01G254700	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:ClpA/B_CS1	InterPro:P-loop_NTPase
PANTHER:PTHR11638	PANTHER:PTHR11638:SF100	PFAM:PF00004	PFAM:PF07724	ScanProsite:PS00870	SEG:seg
SMART:SM00382	SUPFAM:SSF52540	TIGR:cd00009	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5D:-:361182615..361184082

Molecular Weight (calculated)

46414.4 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.014

Length

424 amino acids

Sequence
(BLAST)

001: MLARVLAVTS VGLSWAVAWS LLSRQLKKPF SCTPAILRTL DAAASDPVIG RDDEIDRIIC ILCRCIKNCA ALVGPAGVGK TAIVEGLARR IAAGTVPEAL
101: AGARVAELDV GAMVAGTHWR GMFEQRLKDA IKKAEDSAGK LILFVDEMHM IVGAGDHRGS TGDAANILKP ALARGRICCI GATTTEEYRK YIQKDAALER
201: CFQRVDIDEP TLQATVVILQ GLKQRYQDYH GLKIRDRVAA AHLAGRYITG RQFPDKAIDL MDEACTSLKL HQPKQIRDKK TSTVNAVEEL TVGPCHIAQV
301: VSRWTKIPIT TLGREEEKFS HLVDRLHERV VGQHEAINLV AQEVLRSRVG FDQSSQPIGS FLFLGPTGVG KTELAKALAE KLFDNEKALV RFSMSEYADS
401: GSVSCLIGGP RRFSFYTLWT CISF

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.