Factsheet for TraesCS6D01G135600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25140.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT2G25140.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT2G25140.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT2G25140.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT2G25140.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT2G25140.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G146400.1	Wheat	mitochondrion	99.09	99.09
TraesCS6B01G174500.1	Wheat	mitochondrion	98.49	98.49
HORVU6Hr1G028690.1	Barley	mitochondrion	96.67	97.36
Os02t0181900-01	Rice	mitochondrion	88.09	88.81
EES06386	Sorghum	mitochondrion	88.5	88.59
Zm00001d015520_P001	Maize	mitochondrion	88.09	88.36
GSMUA_Achr9P22420_001	Banana	cytosol	72.25	81.09
Solyc06g011380.2.1	Tomato	cytosol, plastid	16.75	80.98
KRH52355	Soybean	cytosol, mitochondrion	49.55	75.42
KRH61688	Soybean	mitochondrion	74.07	75.36
VIT_04s0008g05870.t01	Wine grape	mitochondrion	72.55	74.74
CDX76768	Canola	mitochondrion	72.45	73.79
CDY56280	Canola	mitochondrion	72.45	73.72
Bra007816.1-P	Field mustard	mitochondrion	72.35	73.61
AT2G25140.1	Thale cress	mitochondrion	70.74	72.72
CDY64721	Canola	cytosol	17.26	70.08
Bra032044.1-P	Field mustard	mitochondrion	53.28	66.5
CDY53470	Canola	mitochondrion	53.18	66.46
CDY68892	Canola	mitochondrion, plastid	54.19	64.78
TraesCS3D01G090400.1	Wheat	mitochondrion	28.66	47.81
TraesCS2D01G136900.1	Wheat	cytosol	24.62	46.74
TraesCS7D01G045200.1	Wheat	extracellular, mitochondrion	24.72	46.58
TraesCS3D01G273600.1	Wheat	cytosol	42.89	46.55
TraesCS7D01G445500.1	Wheat	cytosol	16.85	46.52
TraesCS1D01G342100.1	Wheat	golgi	43.09	46.51
TraesCS5D01G254700.2	Wheat	mitochondrion	19.88	46.46
TraesCS4D01G046000.1	Wheat	cytosol	30.98	46.3
TraesCS4D01G047000.1	Wheat	cytosol	30.58	45.43
TraesCS7D01G045500.1	Wheat	endoplasmic reticulum	28.25	45.02
TraesCS7D01G445400.1	Wheat	cytosol	25.73	44.89
TraesCS7D01G045700.1	Wheat	endoplasmic reticulum	28.15	44.86
TraesCS5D01G429400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	30.17	44.83
TraesCS5D01G429500.1	Wheat	cytosol	30.17	44.69
TraesCS5D01G118700.1	Wheat	plastid	40.57	43.7
TraesCS5D01G074000.1	Wheat	mitochondrion	30.47	43.58
TraesCS7D01G042800.1	Wheat	plastid	28.25	43.55
TraesCS6D01G183600.2	Wheat	cytosol, plastid	40.16	43.45
TraesCS7D01G045400.1	Wheat	cytosol	21.59	43.41
TraesCS2D01G285800.1	Wheat	plastid	40.16	43.4
TraesCS7D01G042900.1	Wheat	cytosol	28.05	43.23
TraesCS5D01G429600.1	Wheat	mitochondrion	29.26	42.15
TraesCS5D01G429700.1	Wheat	endoplasmic reticulum, mitochondrion, plastid	29.06	41.86
TraesCS7D01G046200.1	Wheat	cytosol	21.9	41.57
TraesCS4D01G081100.1	Wheat	plastid	38.55	40.64
TraesCS5D01G328100.1	Wheat	plastid	35.42	37.74
TraesCS2D01G289100.1	Wheat	plastid	35.22	36.89
TraesCS3D01G449000.1	Wheat	cytosol	10.09	35.97

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N
InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0019538
GO:GO:0042026	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	TIGRFAMs:TIGR03346	EnsemblPlantsGene:TraesCS6D01G135600
EnsemblPlants:TraesCS6D01G135600.1	TIGR:cd00009	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:+:104056924..104062845

Molecular Weight (calculated)

110006.0 Da

IEP (calculated)

6.311

GRAVY (calculated)

-0.337

Length

991 amino acids

Sequence
(BLAST)

001: MALSAASRLS RAARAAAVAR RLAAGSREPL PRALASLAGG TPFPTAAKVS RPSWLAPPMA RLPTGGGGGL LVPPRRLFHS TPPARYSASS SSQISPDQFT
101: EMAWEGVAGA VEAARLSKQQ IVESEHLMKA LLEQKDGLAR RIFSKAGIDN TSVLRATDDF IAKQPKVSGD TSGPVVGQSF TLILDKAMKY KKEYGDEFVS
201: VEHMLRAFTA DKRFGQQLFE DLQIGENELK EAISAVRGSQ RVTDQNPEGK FQALEKYGID MTELARRGKL DPVIGRDDEV RRCIQILCRR TKNNPVIIGE
301: PGVGKTAIAE GLAQRIVRGD VPEPLQNRKL ISLDMGALLA GSKYRGEFEE RLKAVLKEVT ASNGQIILFI DEIHTVVGAG ATGGSMDAGN LLKPMLGRGE
401: LRCIGATTLD EYRKYIEKDA ALERRFQQVY CGEPAVEDTV SILRGLRERY EMHHGVKISD GALVAAAALS DRYITGRFLP DKAIDLVDEA AAKLKMEITS
501: KPIELDEVDR EIIRFEMEKL SLKNDTDKAS KERLSKLEAE LESLKQKQKN LSEHWEYEKS LMTRIKSIKE EIDRVNLEIE AAEREYNLNR AAELKYSTLL
601: TLQKQLDEAE ENLTEFQQSG KSMLREEVTD VDIAEIVSKW TGIPVSNLQQ SDREKLLLLE DVLHKRVIGQ DIAVKSVANA IRRSRAGLSD PNRPIASFMF
701: MGPTGVGKTE LGKTLAEFLF NTENALIRID MSEYMEKHAV SRLVGAPPGY VGYEEGGQLS EAVRRRPYSV VLFDEIEKAH QDVFNILLQL LDDGRITDSQ
801: GRTVSFTNCV IIMTSNIGSP LILDTLRNTT DSKDAVYEVM KKQVTEIARQ TFRPEFLNRI DEYIVFQPLD STEINRIVEI QLNRVKNRLL QQKIHLQYTP
901: EAVEHLGALG FDPNYGARPV KRVIQQMVEN EIALGVLKGD FKEDDTVVVD VSSVSIAKGF APKKQLVLQR LENGSTELVA KDGSTELVAN D

Best Arabidopsis Sequence Match ( AT2G25140.1 )
(BLAST)

001: MALRRLSKSV SSAIKAQYTL SRPSPLLRSR SLSSSPHYTS IGRPTNSFIG KINNSSITHA TTTHGQLFPL SSPRRFCTTT AQVNQNEFTE MAWEGLINAF
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA

Arabidopsis Description

CLPB4Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.