CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
EES05647
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25140.1	EES05647	AT3G27960.1	21798944
AT2G25140.1	EER91265	AT4G26630.1	25387881
AT2G25140.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015520_P001	Maize	mitochondrion	96.77	96.96
Os02t0181900-01	Rice	mitochondrion	91.11	91.76
HORVU6Hr1G028690.1	Barley	mitochondrion	88.79	89.33
TraesCS6D01G135600.1	Wheat	golgi	88.59	88.5
TraesCS6A01G146400.1	Wheat	mitochondrion	88.48	88.4
TraesCS6B01G174500.1	Wheat	mitochondrion	88.18	88.09
GSMUA_Achr9P22420_001	Banana	cytosol	74.04	83.01
Solyc06g011380.2.1	Tomato	cytosol, plastid	17.07	82.44
KRH52355	Soybean	cytosol, mitochondrion	50.81	77.27
KRH61688	Soybean	mitochondrion	75.66	76.9
VIT_04s0008g05870.t01	Wine grape	mitochondrion	74.44	76.61
CDX76768	Canola	mitochondrion	74.55	75.85
CDY56280	Canola	mitochondrion	74.55	75.77
Bra007816.1-P	Field mustard	mitochondrion	74.44	75.67
AT2G25140.1	Thale cress	mitochondrion	73.54	75.52
CDY64721	Canola	cytosol	17.27	70.08
CDY53470	Canola	mitochondrion	53.54	66.83
EER94678	Sorghum	plastid	66.26	66.73
Bra032044.1-P	Field mustard	mitochondrion	53.43	66.62
CDY68892	Canola	mitochondrion, plastid	54.75	65.38
EES01468	Sorghum	nucleus	43.84	47.43
EES19828	Sorghum	nucleus	43.43	47.1
EES13207	Sorghum	cytosol	18.69	44.15
OQU85081	Sorghum	mitochondrion, plastid	31.62	43.59
KXG23307	Sorghum	plastid	40.51	43.54
EES12052	Sorghum	plastid	40.2	43.21
OQU79828	Sorghum	plastid	33.33	42.64
OQU81585	Sorghum	cytosol	26.77	41.02
OQU81478	Sorghum	cytosol	34.44	40.07
EES05165	Sorghum	plastid	35.56	36.78

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	EntrezGene:8079407	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	UniProt:C5XWW4	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2
InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	EnsemblPlants:EES06386	ProteinID:EES06386
ProteinID:EES06386.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0016485	GO:GO:0019538
GO:GO:0042026	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86
SMART:SM00382	SMART:SM01086	EnsemblPlantsGene:SORBI_3004G066500	SUPFAM:SSF52540	SUPFAM:SSF81923	unigene:Sbi.6283
TIGRFAMs:TIGR03346	UniParc:UPI0001A85B3A	RefSeq:XP_002453410.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:5408847..5416471

Molecular Weight (calculated)

109780.0 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.306

Length

990 amino acids

Sequence
(BLAST)

001: MARSAASRLA RAARAAAAAT TRRQAPGVSR EVLPRSLAPL AGDASSVFAA ATTRRPAWLA APLGRFPVGA GGAGILVPPR RLFHSTTPAH YSATGTSSSS
101: QITPGEFTEM AWEGIVGAVD AARSSKQQIV ESEHLMKALL EQKDGLARRI FSKAGIDNTS VLQATDDFIS RQPKVVGDTT GPIIGSSFVS ILDNAKKHKK
201: EYGDEFVSVE HILQAFASDK RFGQQLFKDL KIVENDLKEA ISAVRGSQRV TDQNPEGKYQ ALEKYGIDLT ESARRGKLDP VIGRDDEVRR CIQILCRRTK
301: NNPVIIGEPG VGKTAIAEGL AQRIVRGDVP EPLMNRRLIS LDMGALLAGA KFRGEFEERL KAVLKEVTAS NGQIILFIDE IHTVVGAGAA GGAMDAGNLL
401: KPMLGRGELR CIGATTLDEY RKYIEKDAAL ERRFQQVYCG EPAVEDTISI LRGLRERYEL HHGVKISDGA LVAAAVLSDR YITGRFLPDK AIDLVDEAAA
501: KLKMEITSKP IELDEVDREI IRLEMEKLSL KNDTDKASKE RLSKLEAELE SLKQKQKNLS EHWEYEKSLM TRIRSIKEEI DRVNLEIEAA EREYDLNRAA
601: ELKYGTLLSL QKQLEEAENK LVEFQQSGKS MLREEVTDVD IAEIVSKWTG IPVSNLQQSE REKLLLLEDV LHKRVIGQDI AVKSVANAIR RSRAGLSDPN
701: RPIASFMFMG PTGVGKTELG KTLAEFLFNT ENALIRIDMS EYMEKHAVSR LVGAPPGYVG YEEGGQLTES VRRRPYSVVL FDEIEKAHQD VFNILLQLLD
801: DGRITDSQGR TVSFTNCVII MTSNIGSSLI LDTLRNTTDS KEAVYEIMKK QVIEMARQTF RPEFLNRIDE YIVFQPLDTS EINHIVEIQL NRVKNRLKQQ
901: KIHLQYTTAA VELLGSLGFD PNYGARPVKR VIQQMVENEI ALGVLKGDFK EDDTVLVDVS SAAIAKGLAP QKKLVLQRVE NRNEELVAND

Best Arabidopsis Sequence Match ( AT2G25140.1 )
(BLAST)

001: MALRRLSKSV SSAIKAQYTL SRPSPLLRSR SLSSSPHYTS IGRPTNSFIG KINNSSITHA TTTHGQLFPL SSPRRFCTTT AQVNQNEFTE MAWEGLINAF
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA

Arabidopsis Description

CLPB4Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.