CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G274400.1	Wheat	cytosol	90.38	90.58
TraesCS3D01G273600.1	Wheat	cytosol	90.27	90.47
TraesCS3B01G308100.1	Wheat	cytosol	90.16	90.36
HORVU3Hr1G071120.7	Barley	cytosol	89.29	89.39
EES19828	Sorghum	nucleus	88.09	88.28
GSMUA_Achr1P13710_001	Banana	cytosol	78.47	84.37
CDX73074	Canola	cytosol	67.32	82.91
CDX96531	Canola	cytosol	67.21	82.77
GSMUA_Achr3P16240_001	Banana	cytosol	76.61	82.28
VIT_17s0000g07190.t01	Wine grape	nucleus	81.64	82.0
KRH56831	Soybean	endoplasmic reticulum	81.31	81.67
Bra015922.1-P	Field mustard	nucleus	81.09	81.45
CDX85823	Canola	nucleus	78.58	81.43
KRH54672	Soybean	endoplasmic reticulum	66.99	81.41
AT1G74310.1	Thale cress	nucleus	80.77	81.12
Bra003807.1-P	Field mustard	nucleus	77.27	80.16
CDX68190	Canola	nucleus	71.26	80.0
Solyc03g115230.2.1	Tomato	plastid	79.56	79.91
PGSC0003DMT400063352	Potato	nucleus	79.45	79.71
Solyc06g082560.1.1	Tomato	plastid	72.24	77.4
TraesCS4B01G393100.1	Wheat	cytosol	73.11	74.09
AT4G14670.1	Thale cress	cytosol	46.34	68.06
OQU85081	Sorghum	mitochondrion, plastid	42.08	53.62
OQU81585	Sorghum	cytosol	34.86	49.38
AT4G14675.1	Thale cress	cytosol	7.98	45.91
EER94678	Sorghum	plastid	48.2	44.86
EES06386	Sorghum	mitochondrion	47.43	43.84
EES13207	Sorghum	cytosol	18.69	40.81
OQU79828	Sorghum	plastid	34.32	40.57
OQU81478	Sorghum	cytosol	36.72	39.48
KXG23307	Sorghum	plastid	38.36	38.11
EES12052	Sorghum	plastid	37.92	37.68
EES05165	Sorghum	plastid	36.83	35.21

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.3	Gene3D:3.40.50.300	EntrezGene:8062180	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	UniProt:C5XK16	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	EnsemblPlants:EES01468	ProteinID:EES01468	ProteinID:EES01468.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF146
SMART:SM00382	SMART:SM01086	EnsemblPlantsGene:SORBI_3003G293500	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0001A849A8
RefSeq:XP_002456348.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:62597578..62601308

Molecular Weight (calculated)

101543.0 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.317

Length

915 amino acids

Sequence
(BLAST)

001: MNPNKFTHKT NEALALAHNI ASEAGHAQIT PLHLAAALIA DRPGVLRQAI AHASGGNDVA AADSFERVLA STLKRLPSQS PPPDTVPAST ALVKVIRRAQ
101: SAQKVRGDSH LAVDQLLVGL LEDPQVWDAL KEAGVVAARV KAEVDKLRGG DNRRVESASG DTSFQAVKTY GRDLVEVAGK LDPVIGRDEE IRRVVRILSR
201: RTKNNPVLIG EPGVGKTAVV EGLAQRIVRG DVPSNLLDVR LVALDMGALV AGAKYRGEFE ERLKAVLKEV EESDGKVILF IDEIHLVLGA GRTDGSMDAA
301: NLFKPMLARG QLRCIGATTL EEYRKYVEKD AAFERRFQQV YVAEPSVSDT VSILRGLKEK YEGHHGVRIQ DRALVIAAQL SSRYIMGRHL PDKAIDLVDE
401: ACANVRVQLD SQPEEIDNLE RKRIQLEVEL HALEKEKDKA SKARLVEVRK ELDNLRDKLQ PLQMRYRKEK ERIDEIRKLK HRREELLFSL QEAERRMDLA
501: RVADIRYGAL QEIDAAIAKL EGETGENLML TETVGPEQIA EVVSRWTGIP VTRLGQNDKE RLVGLADRLH RRVIGQHEAV NAIAEAVLRS RAGLGRTQQP
601: TGSFLFLGPT GVGKTELAKA LAEQLFDDEK LLVRLDMSEY MEKHSVSRLI GAPPGYVGHE EGGQLTEQVR RRPYSVILFD EVEKAHVAVF NTLLQVLDDG
701: RLTDGQGRTV DFRNTVIIMT SNIGAKHLLA GMVGNNSMKA ARDLVMLEVR KHFRPELLNR LDEIVIFDPL SHEQLRMVAR LQVKEVAYRL AERGVALAVT
801: DAALDLILSL SYDPVYGARP IRRWIEKKVV TELSKMLIKE EIDENSTVSI DASPSKDELI YKVDMNGGLV NAQTGHKSDI LIQVPNGGIN GGAAHTVKKM
901: RLMEDDQDDD DMEEE

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.