CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03117	Soybean	cytosol	47.42	95.15
VIT_17s0000g07190.t01	Wine grape	nucleus	89.9	89.9
KRH54672	Soybean	endoplasmic reticulum	74.09	89.64
CDX73074	Canola	cytosol	72.01	88.29
Bra015922.1-P	Field mustard	nucleus	88.25	88.25
CDX96531	Canola	cytosol	71.9	88.16
CDX85823	Canola	nucleus	84.96	87.66
AT1G74310.1	Thale cress	nucleus	87.38	87.38
Bra003807.1-P	Field mustard	nucleus	84.41	87.19
Solyc03g115230.2.1	Tomato	plastid	86.28	86.28
CDX68190	Canola	nucleus	77.06	86.14
PGSC0003DMT400063352	Potato	nucleus	85.73	85.64
GSMUA_Achr1P13710_001	Banana	cytosol	79.03	84.61
KRH63249	Soybean	mitochondrion	18.0	84.54
TraesCS3A01G274400.1	Wheat	cytosol	84.3	84.12
TraesCS3D01G273600.1	Wheat	cytosol	84.19	84.01
TraesCS3B01G308100.1	Wheat	cytosol	84.19	84.01
Os05t0519700-01	Rice	nucleus	84.08	83.99
EES19828	Sorghum	nucleus	84.08	83.9
Zm00001d038806_P001	Maize	nucleus	83.75	83.66
TraesCS1D01G342100.1	Wheat	golgi	83.1	82.46
TraesCS1B01G352400.1	Wheat	cytosol, golgi	82.99	82.44
GSMUA_Achr3P16240_001	Banana	cytosol	76.95	82.28
Solyc06g082560.1.1	Tomato	plastid	76.84	81.97
TraesCS1A01G340100.1	Wheat	nucleus	82.55	81.92
EES01468	Sorghum	nucleus	81.67	81.31
TraesCS4B01G393100.1	Wheat	cytosol	69.7	70.32
HORVU7Hr1G008950.1	Barley	cytosol, plastid	13.28	50.84
KRH52355	Soybean	cytosol, mitochondrion	35.46	49.62
KRH46928	Soybean	endoplasmic reticulum	6.37	48.74
KRH01254	Soybean	nucleus, plastid	49.29	46.1
KRG93616	Soybean	nucleus	49.4	46.01
KRH44979	Soybean	nucleus, plastid	49.18	46.0
KRH18417	Soybean	nucleus	49.18	45.81
KRH61688	Soybean	mitochondrion	47.31	44.25
KRH59753	Soybean	endoplasmic reticulum	39.63	39.28
KRH63851	Soybean	plastid	39.74	39.26
KRH54115	Soybean	plastid	39.74	39.26
KRH41069	Soybean	mitochondrion, plastid	39.3	38.96
KRH63903	Soybean	plastid	35.35	34.04
KRH54048	Soybean	plastid	35.24	33.79

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.3	Gene3D:3.40.50.300	UniProt:A0A0R0K0U9	InterPro:AAA+_ATPase
EMBL:ACUP02002798	InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G022200	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	InterPro:IPR036628
EnsemblPlants:KRH56831	ProteinID:KRH56831	ProteinID:KRH56831.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861
PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638
PANTHER:PTHR11638:SF146	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0001D62D32
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:1940604..1944604

Molecular Weight (calculated)

101341.0 Da

IEP (calculated)

6.195

GRAVY (calculated)

-0.393

Length

911 amino acids

Sequence
(BLAST)

001: MNPEKFTHKT NEALASAHEL AMSSGHAQLT PIHLAHALIS DPNGIFVLAI NSAGGGEESA RAVERVLNQA LKKLPCQSPP PDEVPASTNL VRAIRRAQAA
101: QKSRGDTHLA VDQLILGILE DSQIGDLLKE AGVAVARVKS EVDKLRGKEG KKVESASGDT NFQALKTYGR DLVEQAGKLD PVIGRDEEIR RVVRILSRRT
201: KNNPVLIGEP GVGKTAVVEG LAQRIVRGDV PSNLADVRLI ALDMGALVAG AKYRGEFEER LKAVLKEVEE AEGKVILFID EIHLVLGAGR TEGSMDAANL
301: FKPMLARGQL RCIGATTLEE YRKYVEKDAA FERRFQQVFV AEPSVVDTIS ILRGLKERYE GHHGVRIQDR ALVMAAQLSN RYITGRHLPD KAIDLVDEAC
401: ANVRVQLDSQ PEEIDNLERK RMQLEVELHA LEKEKDKASK ARLVEVRKEL DDLRDKLQPL MMKYRKEKER VDEIRRLKKK REELLFALQE AERRYDLARA
501: ADLRYGAIQE VETAIQQLEG STEENLMLTE TVGPEQIAEV VSRWTGIPVT RLGQNEKERL IGLGDRLHSR VVGQDQAVNA VAEAVLRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDNENQL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYSVVLFDEV EKAHTSVFNT LLQVLDDGRL
701: TDGQGRTVDF RNTVIIMTSN LGAEHLLSGL SGKCTMQVAR DRVMQEVRRQ FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVASRLAE KGIALAVTDA
801: ALDYILAESY DPVYGARPIR RWLEKKVVTE LSRMLVREEI DENSTVYIDA GPNGGELVYR VEKNGGVVNP TTGQKSDILI QIPNGHAPKT DAVQAVKKMK
901: IEEIDDDEME E

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.