CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	KRG91803	AT4G09570.1	19130088
AT5G50920.1	KRH34983	AT4G09570.1	19130088
AT5G50920.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41069	Soybean	mitochondrion, plastid	97.28	97.28
GSMUA_Achr6P08050_001	Banana	cytosol	13.28	96.06
KRH63851	Soybean	plastid	93.36	93.06
KRH54115	Soybean	plastid	93.36	93.06
CDX84888	Canola	cytosol	83.35	92.62
GSMUA_Achr6P08040_001	Banana	cytosol	64.2	91.61
Os04t0397100-01	Rice	plastid	39.72	90.57
CDY64710	Canola	cytosol	80.63	90.15
Solyc12g042060.1.1	Tomato	plastid	89.34	88.95
PGSC0003DMT400037527	Potato	cytosol	89.23	88.84
Solyc03g118340.2.1	Tomato	nucleus	88.68	88.01
PGSC0003DMT400036961	Potato	plastid	88.57	88.0
PGSC0003DMT400054236	Potato	plastid	86.62	87.47
GSMUA_Achr3P18630_001	Banana	plastid	85.64	87.15
Bra022751.1-P	Field mustard	plastid	87.81	86.87
AT5G50920.1	Thale cress	plastid	87.6	86.65
CDY45800	Canola	plastid	86.62	86.43
Bra018030.1-P	Field mustard	mitochondrion	83.13	86.04
GSMUA_Achr6P16470_001	Banana	plastid	81.94	85.96
Zm00001d025273_P019	Maize	plastid	86.07	85.88
Zm00001d003894_P004	Maize	plastid	85.96	85.78
EES12052	Sorghum	plastid	85.96	85.78
TraesCS6B01G233800.1	Wheat	plastid	85.42	85.7
TraesCS6A01G195200.1	Wheat	plastid	85.42	85.7
TraesCS6D01G183600.2	Wheat	cytosol, plastid	85.31	85.59
HORVU2Hr1G071080.3	Barley	plastid	85.31	85.5
TraesCS2D01G285800.1	Wheat	plastid	85.09	85.28
TraesCS2B01G304200.1	Wheat	golgi	85.09	85.28
TraesCS2A01G287300.2	Wheat	plastid	82.7	84.92
Os12t0230100-01	Rice	plastid	84.87	84.87
CDX68504	Canola	mitochondrion	85.53	84.7
Bra029922.1-P	Field mustard	mitochondrion	85.42	84.59
Zm00001d024009_P001	Maize	plastid	84.77	84.58
KXG23307	Sorghum	plastid	84.77	84.58
CDX83052	Canola	mitochondrion	85.2	84.47
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	90.1	84.4
CDY05878	Canola	mitochondrion	85.09	83.91
TraesCS5A01G118900.1	Wheat	unclear	83.57	83.48
TraesCS5D01G118700.1	Wheat	plastid	83.35	83.26
TraesCS5B01G112500.1	Wheat	plastid	83.35	83.26
GSMUA_Achr8P09160_001	Banana	plastid	82.7	82.25
AT3G48870.3	Thale cress	cytosol, plastid	84.66	81.72
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	83.13	78.52
KRH46928	Soybean	endoplasmic reticulum	8.6	66.39
TraesCS4B01G082900.1	Wheat	mitochondrion	52.23	63.74
GSMUA_AchrUn_...	Banana	plastid	79.98	62.77
KRH63249	Soybean	mitochondrion	10.45	49.48
KRH63903	Soybean	plastid	45.27	43.97
KRH52355	Soybean	cytosol, mitochondrion	31.01	43.78
KRH54048	Soybean	plastid	44.83	43.37
KRH03117	Soybean	cytosol	21.22	42.95
KRH54672	Soybean	endoplasmic reticulum	34.28	41.83
KRH61688	Soybean	mitochondrion	43.63	41.17
KRH01254	Soybean	nucleus, plastid	43.31	40.86
KRH18417	Soybean	nucleus	43.2	40.59
KRG93616	Soybean	nucleus	43.09	40.49
KRH44979	Soybean	nucleus, plastid	42.76	40.35
KRH56831	Soybean	endoplasmic reticulum	39.28	39.63

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100814891	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02003341	InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G201100	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
UniProt:I1K6S6	InterPro:IPR001943	InterPro:IPR036628	EnsemblPlants:KRH59753	ProteinID:KRH59753	ProteinID:KRH59753.1
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI00023399EC	InterPro:UVR_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:38487420..38493497

Molecular Weight (calculated)

102374.0 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.390

Length

919 amino acids

Sequence
(BLAST)

001: MARVLVQSTG MPGLLSGQRH GKHKGSGKSK RSVKMMSTLR MPALRMSSFS GLRTLNPMDS LSRPRHTFPL NTTSRRERAK RCVPKAMFER FTEKAIKVIM
101: LAQEEARRLG HNFVGTEQIL LGLIGEGTGI AAKVLKSMGI NLKDARVEVE KIIGRGSGFV AVEIPFTPRA KRVLEFSLEE ARQLGHNYIG SEHLLLGLLR
201: EGEGVAARVL ENLGADPNNI RAQVIRMVGE GADSVGATVG PGSSNNNKMP TLEEYGTNLT KLAEEGKLDP VVGRQQQIER VTQILGRRTK NNPCLIGEPG
301: VGKTAIAEGL AQRIANGDVP ETIEGKKVIT LDMGLLVAGT KYRGEFEERL KKLMEEIKQS DEIILFIDEV HTLIGAGAAE GAIDAANILK PALARGELQC
401: IGATTLDEYR KHIEKDPALE RRFQPVKVPE PTVDETIQIL KGLRERYEIH HKLRYTDDAL VAAAQLSHQY ISDRFLPDKA IDLIDEAGSR VRLQHAQLPE
501: EARELDKEVR QIVKEKEEFV RNQDFEKAGE LRDREMDLKA QISALIEKGK EMSKAESEAG DEGPMVTEVD IQHIVSSWTG IPVEKVSTDE SDRLLKMEET
601: LHKRVIGQDE AVKAISRAIR RARVGLKNPN RPIASFIFSG PTGVGKSELA KALAAYYFGS EEAMIRLDMS EFMERHTVSK LIGSPPGYVG YTEGGQLTEA
701: VRRRPYTVVL FDEIEKAHPD VFNMMLQILE DGRLTDSKGR TVDFKNTLLI MTSNVGSSVI EKGGRKIGFD LDYDEKDSSY NRIKSLVTEE LKQYFRPEFL
801: NRLDEMIVFR QLTKLEVKEI ADIMLKEVFD RLKAKEIDLS VTERFRERVV DEGYNPSYGA RPLRRAIMRL LEDSMAEKML AREIKEGDSV IVDADSDGNV
901: IVLNGSSGAP DSLEEALPV

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.